miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36765_dmo-mir-9b:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatattatttgttctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||| ||||||
Sbjct: 61 ttattaccaaaaaccaaatggtctttgca 89
>36167_der-mir-9b:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtatgtgttccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36255_dgr-mir-9b:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
|||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctctatggtgtgcgcataatccacagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttattaccaaaaaccaaatggtttttgca 89
>36089_dan-mir-9b:mirbase
Length = 88
Score = 129 bits (65), Expect = 4e-31
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
|||| |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 1 tgcacattatttgttctttggtgattttagctgtatggtgt-ctcatattccatagagct 59
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||||||
Sbjct: 60 ttattaccaaaaaccaaatggtttttgca 88
>37127_dse-mir-9b:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgtattccatagagct 60
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 tgcatattatttggtctttggtgattttagctgtatggtgtataagtattccatagagct 60
Query: 61 ttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||| ||||
Sbjct: 61 ttattaccaaaaaccaaatggtttctgca 89
>37416_dwi-mir-9b-1:mirbase
Length = 90
Score = 125 bits (63), Expect = 6e-30
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctgtatggtgt--gcgcgtattccatagagc 59
|||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtttttgca 89
||||||||||||||||||||||||||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>37417_dwi-mir-9b-2:mirbase
Length = 90
Score = 125 bits (63), Expect = 6e-30
Identities = 84/90 (93%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 2 gcatattatttgctctttggtgattttagctgtatggtgt--gcgcgtattccatagagc 59
|||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||
Sbjct: 1 gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60
Query: 60 tttattaccaaaaaccaaatggtttttgca 89
||||||||||||||||||||||||||||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90
>36349_dme-mir-9b:mirbase
Length = 91
Score = 119 bits (60), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36350_dme-mir-9b:mirbase
Length = 91
Score = 119 bits (60), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtg--tgcgcgtattccatagag 58
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>37496_dya-mir-9b:mirbase
Length = 91
Score = 119 bits (60), Expect = 3e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtg--cgcgtattccatagag 58
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91
>36838_dpe-mir-9b:mirbase
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 78/91 (85%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgta--ttccatagag 58
|||| |||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||| ||||||| ||||||||||||||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>36914_dps-mir-9b:mirbase
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 78/91 (85%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tgcatattatttgctctttggtgattttagctgtatggtgtgcgcgta--ttccatagag 58
|||| |||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct: 1 tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60
Query: 59 ctttattaccaaaaaccaaatggtttttgca 89
|||||| ||||||| ||||||||||||||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91
>35174_aae-mir-9b:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tctttggtgattttagctgtatg 37
|||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37
>35276_aga-mir-9b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 ctttggtgattttagctgtatg 37
||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37
