miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1 ttggcgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccat 60
||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 1 ttggcgcgtcaaattgactgtgagctatgttgttgcagttgtaattcatatcacagccat 60
Query: 61 tttgacgagtttg 73
|||||||||||||
Sbjct: 61 tttgacgagtttg 73
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 64
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 7 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 61
Query: 65 acgagtttg 73
|||||||||
Sbjct: 62 acgagtttg 70
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 64
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 7 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 61
Query: 65 acgagtttg 73
|||||||||
Sbjct: 62 acgagtttg 70
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 64
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 59
Query: 65 acgagtttg 73
|||||||||
Sbjct: 60 acgagtttg 68
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 64
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 59
Query: 65 acgagtttg 73
|||||||||
Sbjct: 60 acgagtttg 68
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 71.9 bits (36), Expect = 6e-14
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 64
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 5 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 59
Query: 65 acgagtttg 73
|||||||||
Sbjct: 60 acgagtttg 68
>36011_cqu-mir-13:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 attcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||||
Sbjct: 50 attcatatcacagccattttgacgagtttg 79
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 attcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||||
Sbjct: 41 attcatatcacagccattttgacgagtttg 70
>35281_aga-mir-13b:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 ttcatatcacagccattttgacgagtttg 73
|||||||||||||||||||||||||||||
Sbjct: 52 ttcatatcacagccattttgacgagtttg 80
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 ttcatatcacagccattttgacgagtttg 73
|||||||||||||||||||||||||||||
Sbjct: 40 ttcatatcacagccattttgacgagtttg 68
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 58.0 bits (29), Expect = 9e-10
Identities = 63/70 (90%), Gaps = 7/70 (10%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccat-tcatatcacagccatttt 63
|||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||
Sbjct: 6 cgcgtcaaaatgactgtgagctatgt-gtt---tttg--atctcatatcacagccatttt 59
Query: 64 gacgagtttg 73
||||||||||
Sbjct: 60 gacgagtttg 69
>35180_aae-mir-13:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 attcatatcacagccattttgacgagtt 71
||||||||||||||||||||||||||||
Sbjct: 49 attcatatcacagccattttgacgagtt 76
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 56.0 bits (28), Expect = 3e-09
Identities = 62/69 (89%), Gaps = 7/69 (10%)
Strand = Plus / Plus
Query: 5 cgcgtcaaaatgactgtgagctatgttgttgcatttgccat-tcatatcacagccatttt 63
|||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgt-gtt---tttg--atctcatatcacagccatttt 57
Query: 64 gacgagttt 72
|||||||||
Sbjct: 58 gacgagttt 66
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagtttg 68
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 attcatatcacagccattttgacgagtt 71
||||||||||||||||||||||||||||
Sbjct: 39 attcatatcacagccattttgacgagtt 66
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gcgtcaaaatgactgtgagctatgtt 31
||||||||||||||||||||||||||
Sbjct: 1 gcgtcaaaatgactgtgagctatgtt 26
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagtttg 73
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||||||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gcgcgtcaaaatgactgtgagctatgtt 31
|||||||||| |||||||||||||||||
Sbjct: 3 gcgcgtcaaattgactgtgagctatgtt 30
>37713_tca-mir-13b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 tatcacagccattttgacgagtttg 73
|||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70
>37714_tca-mir-13b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 tatcacagccattttgacgagtttg 73
|||||||||||||||||||||||||
Sbjct: 46 tatcacagccattttgacgagtttg 70
>36094_dan-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36172_der-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36359_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36360_dme-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>36919_dps-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37132_dse-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccattttgatgagttt 70
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 48 tcatatcacagccattttgatgagttt 74
>37500_dya-mir-13a:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttgacgagttt 72
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgatgagttt 71
>35352_ame-mir-13a:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 46 tcatatcacagccattttga 65
||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttga 80
>37640_nvi-mir-13b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 45 ttcatatcacagcca-ttttgacgagtt 71
||||||||||||||| ||||||||||||
Sbjct: 48 ttcatatcacagccatttttgacgagtt 75
>35353_ame-mir-13b:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45 ttcatatcacagccatttt 63
|||||||||||||||||||
Sbjct: 46 ttcatatcacagccatttt 64
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 46 tcatatcacagcca-ttttgacgagtt 71
|||||||||||||| ||||||||||||
Sbjct: 45 tcatatcacagccatttttgacgagtt 71
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47 catatcacagccattttga 65
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47 catatcacagccattttga 65
|||||||||||||||||||
Sbjct: 49 catatcacagccattttga 67
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47 catatcacagccattttga 65
|||||||||||||||||||
Sbjct: 65 catatcacagccattttga 83
