miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36158_der-mir-3:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgtttccatctcacatcactgggcaaagtgtgt 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgtttctatctcacatcactgggcaaagtgtgt 60
Query: 61 ctcaagatc 69
|||||||||
Sbjct: 61 ctcaagatc 69
>36331_dme-mir-3:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgtttccatctcacatcactgggcaaagtgtgt 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60
Query: 61 ctcaagatc 69
|||||||||
Sbjct: 61 ctcaagatc 69
>36332_dme-mir-3:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgtttccatctcacatcactgggcaaagtgtgt 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60
Query: 61 ctcaagatc 69
|||||||||
Sbjct: 61 ctcaagatc 69
>37118_dse-mir-3:mirbase
Length = 69
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgtttccatctcacatcactgggcaaagtgtgt 60
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60
Query: 61 ctcaagatc 69
|||||||||
Sbjct: 61 ctcaagatc 69
>37196_dsi-mir-3:mirbase
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgtttccatctcacatcactgggcaaagtgtgt 60
||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgttccaatctcacatcactgggcaaagtgtgt 60
Query: 61 ctcaagatc 69
|||||||||
Sbjct: 61 ctcaagatc 69
>36080_dan-mir-3:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaagatc 69
|||||||||||||||||||||||| ||||
Sbjct: 45 catcactgggcaaagtgtgtctcaggatc 73
>36240_dgr-mir-3-1:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctcaa 65
>36241_dgr-mir-3-2:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctcaa 65
>36756_dmo-mir-3:mirbase
Length = 65
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctcaa 64
>37332_dvi-mir-3:mirbase
Length = 65
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 40 catcactgggcaaagtgtgtctcaa 64
>37407_dwi-mir-3:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 36 tctcacatcactgggcaaagtgtgtctca 64
|||| ||||||||||||||||||||||||
Sbjct: 46 tctctcatcactgggcaaagtgtgtctca 74
>36829_dpe-mir-3:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctca 64
||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgt 30
||||||||||||||| ||||||||| ||||
Sbjct: 1 gatcctgggatgcattttgtgcagttatgt 30
>36905_dps-mir-3:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctca 64
||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagtcatgt 30
||||||||||||||| ||||||||| ||||
Sbjct: 1 gatcctgggatgcattttgtgcagttatgt 30
