miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36162_der-mir-6-2:mirbase
Length = 73
Score = 115 bits (58), Expect = 4e-27
Identities = 71/74 (95%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 taaccgcagggaacctctgctgctgatatattattgagaaacttctatatcacagtggct 60
||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 taaccccagggaacctctgctgctgatatattattga-aaactcctatatcacagtggct 59
Query: 61 gttctttttggttg 74
||||||||||||||
Sbjct: 60 gttctttttggttg 73
>37122_dse-mir-6-2:mirbase
Length = 74
Score = 115 bits (58), Expect = 4e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 taaccgcagggaacctctgctgctgatatattattgagaaacttctatatcacagtggct 60
||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 taaccccagggaacttctgctgctgatatattattgaaaaactcctatatcacagtggct 60
Query: 61 gttctttttggttg 74
||||||||||||||
Sbjct: 61 gttctttttggttg 74
>37200_dsi-mir-6-2:mirbase
Length = 74
Score = 115 bits (58), Expect = 4e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 taaccgcagggaacctctgctgctgatatattattgagaaacttctatatcacagtggct 60
||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1 taaccccagggaacttctgctgctgatatattattgaaaaactcctatatcacagtggct 60
Query: 61 gttctttttggttg 74
||||||||||||||
Sbjct: 61 gttctttttggttg 74
>36339_dme-mir-6-2:mirbase
Length = 74
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 8 agggaacctctgctgctgatatattattgagaaacttctatatcacagtggctgttcttt 67
||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 8 agggaacttctgctgctgatatattattgaaaaactactatatcacagtggctgttcttt 67
Query: 68 ttggttg 74
|||||||
Sbjct: 68 ttggttg 74
>36340_dme-mir-6-2:mirbase
Length = 74
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 8 agggaacctctgctgctgatatattattgagaaacttctatatcacagtggctgttcttt 67
||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 8 agggaacttctgctgctgatatattattgaaaaactactatatcacagtggctgttcttt 67
Query: 68 ttggttg 74
|||||||
Sbjct: 68 ttggttg 74
>36760_dmo-mir-6-2:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttggttg 74
|||||||||||||||||||||||||||||||
Sbjct: 51 tctatatcacagtggctgttctttttggttg 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 taaccgcagggaacctctgctgctgatata 30
|||||||||||||| ||||||||||||||
Sbjct: 1 taaccgcagggaactgctgctgctgatata 30
>36834_dpe-mir-6-3:mirbase
Length = 83
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 43 ttctatatcacagtggctgttctttttggtt 73
|||||||||||||||||||||||||||||||
Sbjct: 53 ttctatatcacagtggctgttctttttggtt 83
Score = 58.0 bits (29), Expect = 9e-10
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 aaccgcagggaacctctgctgctgatatattat 34
|||||||||||||| ||||||||||||||||||
Sbjct: 3 aaccgcagggaaccgctgctgctgatatattat 35
>36909_dps-mir-6-2:mirbase
Length = 83
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 43 ttctatatcacagtggctgttctttttggtt 73
|||||||||||||||||||||||||||||||
Sbjct: 53 ttctatatcacagtggctgttctttttggtt 83
Score = 58.0 bits (29), Expect = 9e-10
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 aaccgcagggaacctctgctgctgatatattat 34
|||||||||||||| ||||||||||||||||||
Sbjct: 3 aaccgcagggaaccgctgctgctgatatattat 35
>37411_dwi-mir-6-2:mirbase
Length = 94
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 43 ttctatatcacagtggctgttctttttggtt 73
|||||||||||||||||||||||||||||||
Sbjct: 64 ttctatatcacagtggctgttctttttggtt 94
>36247_dgr-mir-6-2:mirbase
Length = 79
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 ctatatcacagtggctgttctttttggttg 74
||||||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttggttg 79
>36250_dgr-mir-6-5:mirbase
Length = 79
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 ctatatcacagtggctgttctttttggttg 74
||||||||||||||||||||||||||||||
Sbjct: 50 ctatatcacagtggctgttctttttggttg 79
>37336_dvi-mir-6-2:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 atatcacagtggctgttctttttggttg 74
||||||||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttctttttggttg 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 taaccgcagggaacctctgctgctgatata 30
|||||||||||||| ||||||||||||||
Sbjct: 1 taaccgcagggaactgctgctgctgatata 30
>36083_dan-mir-6-1:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 39 tctatatcacagtggctgttctttttg 65
>36084_dan-mir-6-2:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 ctatatcacagtggctgttctttttgg 71
|||||||||||||||||||||||||||
Sbjct: 55 ctatatcacagtggctgttctttttgg 81
>36161_der-mir-6-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 43 tctatatcacagtggctgttctttttg 69
>36246_dgr-mir-6-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68
>36249_dgr-mir-6-4:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68
>36337_dme-mir-6-1:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 48 tctatatcacagtggctgttctttttg 74
>36338_dme-mir-6-1:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 48 tctatatcacagtggctgttctttttg 74
>37121_dse-mir-6-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 43 tctatatcacagtggctgttctttttg 69
>37199_dsi-mir-6-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 43 tctatatcacagtggctgttctttttg 69
>37335_dvi-mir-6-1:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 42 tctatatcacagtggctgttctttttg 68
>37489_dya-mir-6-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tctatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||||
Sbjct: 43 tctatatcacagtggctgttctttttg 69
>36759_dmo-mir-6-1:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||
Sbjct: 40 tatatcacagtggctgttctttttg 64
>36832_dpe-mir-6-1:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttctttttg 67
>36908_dps-mir-6-1:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttctttttg 70
|||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttctttttg 72
>36085_dan-mir-6-3:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70
>36163_der-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36248_dgr-mir-6-3:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>36251_dgr-mir-6-6:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>36341_dme-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36342_dme-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36761_dmo-mir-6-3:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>36833_dpe-mir-6-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>36910_dps-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>37123_dse-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>37201_dsi-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>37337_dvi-mir-6-3:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70
>37410_dwi-mir-6-1:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 atatcacagtggctgttctttttg 70
||||||||||||||||||||||||
Sbjct: 44 atatcacagtggctgttctttttg 67
>37412_dwi-mir-6-3:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 50 tatatcacagtggctgttcttttt 73
>37491_dya-mir-6-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tatatcacagtggctgttcttttt 69
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
