miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36167_der-mir-9b:mirbase
          Length = 89

 Score =  151 bits (76), Expect = 1e-37
 Identities = 88/91 (96%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgt--atgtgttccatagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89




>36349_dme-mir-9b:mirbase
          Length = 91

 Score =  141 bits (71), Expect = 1e-34
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          ||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91




>36350_dme-mir-9b:mirbase
          Length = 91

 Score =  141 bits (71), Expect = 1e-34
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          ||||||||||||||||||||||||||||||||||||||||| | | | | ||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtttatgtatattccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 ctttattaccaaaaaccaaatggtttctgca 91




>37127_dse-mir-9b:mirbase
          Length = 89

 Score =  127 bits (64), Expect = 1e-30
 Identities = 85/91 (93%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          ||||||||||||| ||||||||||||||||||||||||||| |  | || ||||||||||
Sbjct: 1  tgcatattatttggtctttggtgattttagctgtatggtgtat--aagtattccatagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttctgca 89




>37341_dvi-mir-9b:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 4e-28
 Identities = 84/91 (92%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          ||||||||||||||||||||||||||||||||||||||||||     || ||||||||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctgtatggtgtg--cgcgtattccatagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89




>36765_dmo-mir-9b:mirbase
          Length = 89

 Score =  105 bits (53), Expect = 5e-24
 Identities = 77/84 (91%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          ||||||||||||| ||||||||||||||||||||||||||||     || ||||||||||
Sbjct: 1  tgcatattatttgttctttggtgattttagctgtatggtgtg--cgcgtattccatagag 58

                                  
Query: 61 ctttattaccaaaaaccaaatggt 84
          ||||||||||||||||||||||||
Sbjct: 59 ctttattaccaaaaaccaaatggt 82




>37416_dwi-mir-9b-1:mirbase
          Length = 90

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagagc 61
          |||||||||||| ||||||||||||||||||||||||||| |     |  ||||||||||
Sbjct: 1  gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60

                                        
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
          ||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90




>37417_dwi-mir-9b-2:mirbase
          Length = 90

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                      
Query: 2  gcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagagc 61
          |||||||||||| ||||||||||||||||||||||||||| |     |  ||||||||||
Sbjct: 1  gcatattatttggtctttggtgattttagctgtatggtgtatgagcataatccatagagc 60

                                        
Query: 62 tttattaccaaaaaccaaatggtttctgca 91
          ||||||||||||||||||||||||| ||||
Sbjct: 61 tttattaccaaaaaccaaatggtttttgca 90




>36089_dan-mir-9b:mirbase
          Length = 88

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 81/91 (89%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          |||| |||||||| ||||||||||||||||||||||||||| |     | ||||||||||
Sbjct: 1  tgcacattatttgttctttggtgattttagctgtatggtgtctca---tattccatagag 57

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 58 ctttattaccaaaaaccaaatggtttttgca 88




>36255_dgr-mir-9b:mirbase
          Length = 89

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 81/91 (89%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          |||||||||||||||||||||||||||||||| |||||||||   |  |  |||| ||||
Sbjct: 1  tgcatattatttgctctttggtgattttagctctatggtgtgcgca--taatccacagag 58

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||||||||||||||||||||||| ||||
Sbjct: 59 ctttattaccaaaaaccaaatggtttttgca 89




>36838_dpe-mir-9b:mirbase
          Length = 91

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          |||| |||||||| ||||||||||||||||||||||||||| | |    | |||||||||
Sbjct: 1  tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91




>36914_dps-mir-9b:mirbase
          Length = 91

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgcatattatttgctctttggtgattttagctgtatggtgtgtttatgtgttccatagag 60
          |||| |||||||| ||||||||||||||||||||||||||| | |    | |||||||||
Sbjct: 1  tgcacattatttgatctttggtgattttagctgtatggtgtatatcaaagatccatagag 60

                                         
Query: 61 ctttattaccaaaaaccaaatggtttctgca 91
          |||||| ||||||| ||||||||||| ||||
Sbjct: 61 ctttatcaccaaaacccaaatggtttttgca 91




>35174_aae-mir-9b:mirbase
          Length = 92

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 15 tctttggtgattttagctgtatg 37
          |||||||||||||||||||||||
Sbjct: 15 tctttggtgattttagctgtatg 37




>35276_aga-mir-9b:mirbase
          Length = 93

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 ctttggtgattttagctgtatg 37
          ||||||||||||||||||||||
Sbjct: 16 ctttggtgattttagctgtatg 37