miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36168_der-mir-9c:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36090_dan-mir-9c:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36351_dme-mir-9c:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36352_dme-mir-9c:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>37128_dse-mir-9c:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttcacgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36839_dpe-mir-9c:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>36915_dps-mir-9c:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatc 60
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 taaagcttttataccaaagctccagcttaaat 92
>37418_dwi-mir-9c-1:mirbase
Length = 91
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 2 tttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatct 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatct 60
Query: 62 aaagcttttataccaaagctccagcttaaat 92
|||||||||||||||||||||||||||||||
Sbjct: 61 aaagcttttataccaaagctccagcttaaat 91
>37419_dwi-mir-9c-2:mirbase
Length = 91
Score = 157 bits (79), Expect = 2e-39
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 2 tttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatct 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tttttgctgtttctttggtattctagctgtagattgttttttgcacattgtatatcatct 60
Query: 62 aaagcttttataccaaagctccagcttaaat 92
|||||||||||||||||||||||||||||||
Sbjct: 61 aaagcttttataccaaagctccagcttaaat 91
>36766_dmo-mir-9c:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 85/92 (92%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttt---tcacatattgtatcatc 57
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 58 taaagcttttataccaaagctccagcttaaat 89
>36256_dgr-mir-9c:mirbase
Length = 89
Score = 115 bits (58), Expect = 6e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
||||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgtttc---tatatcttgtatcatc 57
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 58 taaagcttttataccaaagctccagcttaaat 89
>37342_dvi-mir-9c:mirbase
Length = 89
Score = 115 bits (58), Expect = 6e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 atttttgctgtttctttggtattctagctgtagattgtttcgcgcacattgtatatcatc 60
|||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct: 1 atttttgctgtttctttggtattctagctgtagattgttt---ttacagtttgtatcatc 57
Query: 61 taaagcttttataccaaagctccagcttaaat 92
||||||||||||||||||||||||||||||||
Sbjct: 58 taaagcttttataccaaagctccagcttaaat 89
>35277_aga-mir-9c:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 gctgtttctttggtattctagctgtagattgtt 39
||||| |||||||||||||||||||||| ||||
Sbjct: 7 gctgtatctttggtattctagctgtagaatgtt 39
>35175_aae-mir-9c:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttggtattctagctgtagattgtt 39
|||||||||||||||||||||| ||||
Sbjct: 6 tctttggtattctagctgtagaatgtt 32
>35176_aae-mir-9c:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttggtattctagctgtagattgtt 39
|||||||||||||||||||||| ||||
Sbjct: 6 tctttggtattctagctgtagaatgtt 32
>36007_cqu-mir-9:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttggtattctagctgtagattgtt 39
|||||||||||||||||||||| ||||
Sbjct: 23 tctttggtattctagctgtagaatgtt 49
