miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36355_dme-mir-11:mirbase
          Length = 75

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60
          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                      
Query: 61 gttcttgctgag 72
          ||||||||||||
Sbjct: 61 gttcttgctgag 72




>36356_dme-mir-11:mirbase
          Length = 75

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60
          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                      
Query: 61 gttcttgctgag 72
          ||||||||||||
Sbjct: 61 gttcttgctgag 72




>37130_dse-mir-11:mirbase
          Length = 75

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60
          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                      
Query: 61 gttcttgctgag 72
          ||||||||||||
Sbjct: 61 gttcttgctgag 72




>37206_dsi-mir-11:mirbase
          Length = 75

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60
          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                      
Query: 61 gttcttgctgag 72
          ||||||||||||
Sbjct: 61 gttcttgctgag 72




>36170_der-mir-11:mirbase
          Length = 75

 Score =  133 bits (67), Expect = 2e-32
 Identities = 73/75 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60
          ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1  gcacttgccaagaactttctctgtgacctgcgtgtactgaaaagccgcatcacagtctga 60

                         
Query: 61 gttcttgctgagcgc 75
          |||||||||||||||
Sbjct: 61 gttcttgctgagcgc 75




>36841_dpe-mir-11:mirbase
          Length = 71

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 62/71 (87%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  cttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctgagtt 63
          ||||||||||||||  |||||||||||||||   || |  ||| ||||||||||||||||
Sbjct: 3  cttgtcaagaacttattctgtgacctgcgtgacattta--gccacatcacagtctgagtt 60

                     
Query: 64 cttgctgagcg 74
          |||||||||||
Sbjct: 61 cttgctgagcg 71




>36917_dps-mir-11:mirbase
          Length = 71

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 62/71 (87%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  cttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctgagtt 63
          ||||||||||||||  |||||||||||||||   || |  ||| ||||||||||||||||
Sbjct: 3  cttgtcaagaacttattctgtgacctgcgtgacattta--gccacatcacagtctgagtt 60

                     
Query: 64 cttgctgagcg 74
          |||||||||||
Sbjct: 61 cttgctgagcg 71




>37421_dwi-mir-11:mirbase
          Length = 82

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 45 ccgcatcacagtctgagttcttgctgagcg 74
          ||||||||||||||||||||||||||||||
Sbjct: 53 ccgcatcacagtctgagttcttgctgagcg 82



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 4  cttgtcaagaactttctctgtgacctgcgtg 34
          |||||||||| || |||||||||||||||||
Sbjct: 2  cttgtcaagatctctctctgtgacctgcgtg 32




>36258_dgr-mir-11:mirbase
          Length = 79

 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 46 cgcatcacagtctgagttcttgctgagcg 74
          |||||||||||||||||||||||||||||
Sbjct: 51 cgcatcacagtctgagttcttgctgagcg 79




>36768_dmo-mir-11:mirbase
          Length = 81

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 45 ccgcatcacagtctgagttcttgctgagcgc 75
          ||||||||||||||||||||||||| |||||
Sbjct: 51 ccgcatcacagtctgagttcttgcttagcgc 81



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 9  caagaactttctctgtgacctgcgtg 34
          |||||||||| |||||||||||||||
Sbjct: 9  caagaactttttctgtgacctgcgtg 34




>37344_dvi-mir-11:mirbase
          Length = 81

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 45 ccgcatcacagtctgagttcttgctgagcgc 75
          ||||||||||||||||||||||||| |||||
Sbjct: 51 ccgcatcacagtctgagttcttgcttagcgc 81




>36092_dan-mir-11:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 catcacagtctgagttcttgctgag 72
          |||||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgctgag 76




>35178_aae-mir-11:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 catcacagtctgagttcttgct 69
          ||||||||||||||||||||||
Sbjct: 67 catcacagtctgagttcttgct 88




>35279_aga-mir-11:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 catcacagtctgagttcttgct 69
          ||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84




>36009_cqu-mir-11:mirbase
          Length = 76

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 catcacagtctgagttcttgct 69
          ||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73