miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36097_dan-mir-14:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 4e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36175_der-mir-14:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 4e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36365_dme-mir-14:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 4e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36366_dme-mir-14:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 4e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>37135_dse-mir-14:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 4e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>37211_dsi-mir-14:mirbase
          Length = 63

 Score =  125 bits (63), Expect = 4e-30
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36263_dgr-mir-14:mirbase
          Length = 63

 Score =  109 bits (55), Expect = 2e-25
 Identities = 61/63 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgctttttatatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>37349_dvi-mir-14:mirbase
          Length = 63

 Score =  109 bits (55), Expect = 2e-25
 Identities = 61/63 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgctttttatatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36773_dmo-mir-14:mirbase
          Length = 63

 Score =  101 bits (51), Expect = 5e-23
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgatttttatatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36846_dpe-mir-14:mirbase
          Length = 63

 Score =  101 bits (51), Expect = 5e-23
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttttgaagtagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>36922_dps-mir-14:mirbase
          Length = 63

 Score =  101 bits (51), Expect = 5e-23
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacggggactcactgtgcttttgaagtagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>37426_dwi-mir-14:mirbase
          Length = 63

 Score =  101 bits (51), Expect = 5e-23
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtgggagcgagacggggactcactgtgcttattaaatagtcagtctttttctctctcct 60
          ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1  tgtgggagcgagacgaggactcactgtgctttttatatagtcagtctttttctctctcct 60

             
Query: 61 ata 63
          |||
Sbjct: 61 ata 63

>35354_ame-mir-14:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 37 atagtcagtctttttctctctcctat 62
          ||||||||||||||||||||||||||
Sbjct: 60 atagtcagtctttttctctctcctat 85

>35528_bmo-mir-14:mirbase
          Length = 80

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 38 tagtcagtctttttctctctcctata 63
          ||||||||||||||||||||||||||
Sbjct: 45 tagtcagtctttttctctctcctata 70

>35052_api-mir-14:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 38 tagtcagtctttttctctctcctat 62
          |||||||||||||||||||||||||
Sbjct: 62 tagtcagtctttttctctctcctat 86

>35282_aga-mir-14:mirbase
          Length = 94

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 38 tagtcagtctttttctctctcctat 62
          |||||||||||||||||||||||||
Sbjct: 55 tagtcagtctttttctctctcctat 79

>35181_aae-mir-14:mirbase
          Length = 173

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 39  agtcagtctttttctctctcctat 62
           ||||||||||||||||||||||||
Sbjct: 93  agtcagtctttttctctctcctat 116

>36012_cqu-mir-14:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 39 agtcagtctttttctctctcctat 62
          ||||||||||||||||||||||||
Sbjct: 55 agtcagtctttttctctctcctat 78

>37573_ngi-mir-14:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 39 agtcagtctttttctctctcctat 62
          ||||||||||||||||||||||||
Sbjct: 57 agtcagtctttttctctctcctat 80

>37641_nvi-mir-14:mirbase
          Length = 103

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 39 agtcagtctttttctctctcctat 62
          ||||||||||||||||||||||||
Sbjct: 65 agtcagtctttttctctctcctat 88

>37715_tca-mir-14:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 39 agtcagtctttttctctctcctat 62
          ||||||||||||||||||||||||
Sbjct: 51 agtcagtctttttctctctcctat 74

>37716_tca-mir-14:mirbase
          Length = 87

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 39 agtcagtctttttctctctcctat 62
          ||||||||||||||||||||||||
Sbjct: 51 agtcagtctttttctctctcctat 74