miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36177_der-mir-31b:mirbase
          Length = 127

 Score =  228 bits (115), Expect = 8e-61
 Identities = 124/127 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctttga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctctta 60

                                                                       
Query: 61  tcgtccgaaaaaatgtgaatattttttaaaagcggctatgcctcatctagtcaattgcat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  tcgtccgaaaaaatgtgaatatttttgaaaagcggctatgcctcatctagtcaattgcat 120

                  
Query: 121 tactttg 127
           |||||||
Sbjct: 121 tactttg 127




>37137_dse-mir-31b:mirbase
          Length = 127

 Score =  220 bits (111), Expect = 2e-58
 Identities = 123/127 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctttga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctctta 60

                                                                       
Query: 61  tcgtccgaaaaaatgtgaatattttttaaaagcggctatgcctcatctagtcaattgcat 120
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  tcgtccgaaaaaatgtgattatttttgaaaagcggctatgcctcatctagtcaattgcat 120

                  
Query: 121 tactttg 127
           |||||||
Sbjct: 121 tactttg 127




>37213_dsi-mir-31b:mirbase
          Length = 127

 Score =  220 bits (111), Expect = 2e-58
 Identities = 123/127 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctttga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctctta 60

                                                                       
Query: 61  tcgtccgaaaaaatgtgaatattttttaaaagcggctatgcctcatctagtcaattgcat 120
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  tcgtccgaaaaaatgtgattatttttgaaaagcggctatgcctcatctagtcaattgcat 120

                  
Query: 121 tactttg 127
           |||||||
Sbjct: 121 tactttg 127




>36369_dme-mir-31b:mirbase
          Length = 127

 Score =  212 bits (107), Expect = 5e-56
 Identities = 122/127 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctttga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgaacatttta 60

                                                                       
Query: 61  tcgtccgaaaaaatgtgaatattttttaaaagcggctatgcctcatctagtcaattgcat 120
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  tcgtccgaaaaaatgtgattatttttgaaaagcggctatgcctcatctagtcaattgcat 120

                  
Query: 121 tactttg 127
           |||||||
Sbjct: 121 tactttg 127




>36370_dme-mir-31b:mirbase
          Length = 127

 Score =  212 bits (107), Expect = 5e-56
 Identities = 122/127 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgagcctttga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacagcggatcgaacatttta 60

                                                                       
Query: 61  tcgtccgaaaaaatgtgaatattttttaaaagcggctatgcctcatctagtcaattgcat 120
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61  tcgtccgaaaaaatgtgattatttttgaaaagcggctatgcctcatctagtcaattgcat 120

                  
Query: 121 tactttg 127
           |||||||
Sbjct: 121 tactttg 127




>36775_dmo-mir-31b:mirbase
          Length = 127

 Score = 85.7 bits (43), Expect = 7e-18
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                     
Query: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 91  agcggctatgcctcatctagtcaattgcatt 121
           |||||||||||||||||||||||||||||||
Sbjct: 91  agcggctatgcctcatctagtcaattgcatt 121




>37351_dvi-mir-31b:mirbase
          Length = 126

 Score = 85.7 bits (43), Expect = 7e-18
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                     
Query: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 91  agcggctatgcctcatctagtcaattgcatt 121
           |||||||||||||||||||||||||||||||
Sbjct: 90  agcggctatgcctcatctagtcaattgcatt 120




>36099_dan-mir-31b:mirbase
          Length = 95

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 11 atttggcaagatgtcggaatagctgagagcacagcggatcgagc 54
          |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1  atttggcaagatgtcggaatagctgagagcacagaggatcgagc 44



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 89  aaagcggctatgcctcatctagtcaat 115
           |||||||||||||||||||||||||||
Sbjct: 69  aaagcggctatgcctcatctagtcaat 95




>36265_dgr-mir-31b:mirbase
          Length = 126

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                     
Query: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
          |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1  caaataatgaatttggcaagatgtcggaatagctgacagcaca 43



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 91  agcggctatgcctcatctagtcaattgcatt 121
           |||||||||||||||||||||||||||||||
Sbjct: 90  agcggctatgcctcatctagtcaattgcatt 120




>36924_dps-mir-31b:mirbase
          Length = 89

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 10 aatttggcaagatgtcggaatagctgagagca 41
          ||||||||||||||||||||||||||||||||
Sbjct: 1  aatttggcaagatgtcggaatagctgagagca 32



 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 92  gcggctatgcctcatctagtcaattgcatt 121
           ||||||||||||||||||||||||||||||
Sbjct: 53  gcggctatgcctcatctagtcaattgcatt 82




>36848_dpe-mir-31b:mirbase
          Length = 77

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 11 atttggcaagatgtcggaatagctgagagca 41
          |||||||||||||||||||||||||||||||
Sbjct: 1  atttggcaagatgtcggaatagctgagagca 31



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 92  gcggctatgcctcatctagtcaattg 117
           ||||||||||||||||||||||||||
Sbjct: 52  gcggctatgcctcatctagtcaattg 77




>37428_dwi-mir-31b:mirbase
          Length = 138

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 93  cggctatgcctcatctagtcaattgcattactttg 127
           |||||||||||||||||||||||||||||| ||||
Sbjct: 104 cggctatgcctcatctagtcaattgcattagtttg 138



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 11 atttggcaagatgtcggaatagctga 36
          ||||||||||||||||||||||||||
Sbjct: 9  atttggcaagatgtcggaatagctga 34




>36098_dan-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36176_der-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36264_dgr-mir-31a:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36367_dme-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36368_dme-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36774_dmo-mir-31a:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36847_dpe-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>36923_dps-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>37136_dse-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>37212_dsi-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>37350_dvi-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36




>37427_dwi-mir-31a:mirbase
          Length = 88

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 14 ttggcaagatgtcggcatagctga 37




>37504_dya-mir-31a:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 13 ttggcaagatgtcggaatagctga 36
          ||||||||||||||| ||||||||
Sbjct: 13 ttggcaagatgtcggcatagctga 36