miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36178_der-mir-33:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 cagagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaata 60
Query: 61 caacttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||||
Sbjct: 61 caacttcagtgcaagctctgtgcatttcac 90
>36371_dme-mir-33:mirbase
Length = 99
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 71
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||
Sbjct: 72 acttcagtgcaagctctgtgcatttcac 99
>36372_dme-mir-33:mirbase
Length = 99
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 71
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||
Sbjct: 72 acttcagtgcaagctctgtgcatttcac 99
>37138_dse-mir-33:mirbase
Length = 90
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90
>37214_dsi-mir-33:mirbase
Length = 90
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagatgacacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||||||||||||||||||||||||||||
Sbjct: 63 acttcagtgcaagctctgtgcatttcac 90
>36100_dan-mir-33:mirbase
Length = 90
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattgcttcaggcaataca 62
||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 3 gagatgtcacgcaggtgcattgtagtcgcattgtctgtcccacttgctccaggcaataca 62
Query: 63 acttcagtgcaagctctgtgcatttcac 90
||| ||||||||||||||||||||||||
Sbjct: 63 actgcagtgcaagctctgtgcatttcac 90
>36849_dpe-mir-33:mirbase
Length = 90
Score = 103 bits (52), Expect = 2e-23
Identities = 80/88 (90%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaatac 61
|||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 3 gagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaatac 62
Query: 62 aacttcagtgcaagctctgtgcatttca 89
|||| |||||||||||||||||||||||
Sbjct: 63 aactgcagtgcaagctctgtgcatttca 90
>36925_dps-mir-33:mirbase
Length = 91
Score = 95.6 bits (48), Expect = 5e-21
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 3 gagatgtcacgaaggtgcattgtagtcgcattgtctgtcccaattg-cttcaggcaatac 61
|||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 4 gagatgacacgcaggtgcattgtagtcgcattgtctgtccatcttgatttcaggcaatac 63
Query: 62 aacttcagtgcaagctctgtgcatttca 89
|||| || ||||||||||||||||||||
Sbjct: 64 aactgcaatgcaagctctgtgcatttca 91
>36266_dgr-mir-33:mirbase
Length = 92
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/86 (89%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 7 tgtcacgaaggtgcattgtagtcgcattgtctgtcc--caattgcttcaggcaatacaac 64
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct: 7 tgtcacgaaggtgcattgtagtcgcattgtctgtccaaaaattgcatgcggcaatacaac 66
Query: 65 ttcagtgcaagctctgtgcatttcac 90
| |||||||||||| ||||| |||||
Sbjct: 67 tgcagtgcaagctccgtgcagttcac 92
>37352_dvi-mir-33:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 72
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
Query: 73 aagctctgtgcatttcac 90
|||||| ||||| |||||
Sbjct: 75 aagctccgtgcagttcac 92
>37429_dwi-mir-33:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 cacgaaggtgcattgtagtcgcattgtctgt 40
|||||||||||||||||||||||||||||||
Sbjct: 8 cacgaaggtgcattgtagtcgcattgtctgt 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 50 ttcaggcaatacaacttcagtgcaagct 77
|||||||||||||||| |||||||||||
Sbjct: 69 ttcaggcaatacaactgcagtgcaagct 96
>36776_dmo-mir-33:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 15 aggtgcattgtagtcgcattgtctgt 40
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 54 ggcaatacaacttcagtgcaagctctgtgcatttcac 90
|||||||||||| |||||||||||| ||||| |||||
Sbjct: 57 ggcaatacaactgcagtgcaagctccgtgcagttcac 93
