miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36373_dme-mir-34:mirbase
          Length = 99

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 63

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttcacagccactatcttcactgccgccgcgacaagc 99




>36374_dme-mir-34:mirbase
          Length = 99

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 63

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttcacagccactatcttcactgccgccgcgacaagc 99




>37139_dse-mir-34:mirbase
          Length = 96

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96




>37215_dsi-mir-34:mirbase
          Length = 96

 Score =  190 bits (96), Expect = 1e-49
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcacagccactatcttcactgccgccgcgacaagc 96




>36850_dpe-mir-34:mirbase
          Length = 97

 Score =  153 bits (77), Expect = 3e-38
 Identities = 93/97 (95%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagcc-aattattgccgttgaca 59
          |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| 
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 60

                                               
Query: 60 attcacagccactatcttcactgccgccgcgacaagc 96
          |||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcacagccactatcttcactgccgccgcgacaagc 97




>36926_dps-mir-34:mirbase
          Length = 100

 Score =  153 bits (77), Expect = 3e-38
 Identities = 93/97 (95%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctatgcgctttggcagtgtggttagctggttgtgtagcc-aattattgccgttgaca 59
           |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| 
Sbjct: 4   tggctatgcgctttggcagtgtggttagctggttgtgtagccaaaatattgcctttgacc 63

                                                
Query: 60  attcacagccactatcttcactgccgccgcgacaagc 96
           |||||||||||||||||||||||||||||||||||||
Sbjct: 64  attcacagccactatcttcactgccgccgcgacaagc 100




>36179_der-mir-34:mirbase
          Length = 96

 Score =  151 bits (76), Expect = 1e-37
 Identities = 91/96 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          ||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaatcattgcttgtgacaa 60

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
           |||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcacagccactatcttcactgccgccgcgacaagc 96




>37353_dvi-mir-34:mirbase
          Length = 87

 Score =  111 bits (56), Expect = 9e-26
 Identities = 85/96 (88%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          |||||||||||||||||||||||||||||||||||||| |||||         |||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ttgacaa 51

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
           |||||||||||||||||||||||||||||||||||
Sbjct: 52 atcacagccactatcttcactgccgccgcgacaagc 87




>36267_dgr-mir-34:mirbase
          Length = 87

 Score =  103 bits (52), Expect = 2e-23
 Identities = 84/96 (87%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          |||||||||||||||||||||||||||||||||||||| |||||          ||||||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggccaa---------ctgacaa 51

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
           |||||||||||||||||||||||||||||||||||
Sbjct: 52 atcacagccactatcttcactgccgccgcgacaagc 87




>37430_dwi-mir-34:mirbase
          Length = 100

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 88/98 (89%), Gaps = 6/98 (6%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaatt--attgccgttgac 58
          ||||||||||||||||||||||||||||||||||||||||||||||  ||||||    ||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattaaattgcc-aaaac 59

                                                
Query: 59 aat---tcacagccactatcttcactgccgccgcgaca 93
          |||    |||||||||||||||||||||||||||||||
Sbjct: 60 aataaaccacagccactatcttcactgccgccgcgaca 97




>36777_dmo-mir-34:mirbase
          Length = 87

 Score = 95.6 bits (48), Expect = 5e-21
 Identities = 83/96 (86%), Gaps = 9/96 (9%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgccgttgacaa 60
          |||||||||||||||||||||||||||||||||||||| ||||          |||| ||
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtggcca---------cttgaaaa 51

                                              
Query: 61 ttcacagccactatcttcactgccgccgcgacaagc 96
           |||||||||||||||||||||||||||||||||||
Sbjct: 52 atcacagccactatcttcactgccgccgcgacaagc 87




>36101_dan-mir-34:mirbase
          Length = 97

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 89/101 (88%), Gaps = 9/101 (8%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagccaattattgc-cgttgac- 58
          |||||||||||||||||||||||||||||||||||||||||    |  ||| ||||| | 
Sbjct: 1  tggctatgcgctttggcagtgtggttagctggttgtgtagc----tggtgctcgttggca 56

                                                   
Query: 59 ---aattcacagccactatcttcactgccgccgcgacaagc 96
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 57 attaattcacagccactatcttcactgccgccgcgacaagc 97




>37645_nvi-mir-34:mirbase
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 13 ttggcagtgtggttagctggttgtgtagc 41
          |||||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgtagc 48




>35184_aae-mir-34:mirbase
          Length = 129

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 9  cgctttggcagtgtggttagctggttgtgtag 40
          |||| |||||||||||||||||||||||||||
Sbjct: 11 cgctatggcagtgtggttagctggttgtgtag 42




>37576_ngi-mir-34:mirbase
          Length = 80

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 13 ttggcagtgtggttagctggttgtgtag 40
          ||||||||||||||||||||||||||||
Sbjct: 7  ttggcagtgtggttagctggttgtgtag 34




>37608_nlo-mir-34:mirbase
          Length = 80

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 13 ttggcagtgtggttagctggttgtgtag 40
          ||||||||||||||||||||||||||||
Sbjct: 7  ttggcagtgtggttagctggttgtgtag 34




>35531_bmo-mir-34:mirbase
          Length = 98

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 13 ttggcagtgtggttagctggttgtgta 39
          |||||||||||||||||||||||||||
Sbjct: 20 ttggcagtgtggttagctggttgtgta 46




>35283_aga-mir-34:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 9  cgctttggcagtgtggttagctggttgtgt 38
          |||| |||||||||||||||||||||||||
Sbjct: 12 cgctctggcagtgtggttagctggttgtgt 41




>35005_dpu-mir-34:mirbase
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 13 ttggcagtgtggttagctggttgtg 37
          |||||||||||||||||||||||||
Sbjct: 21 ttggcagtgtggttagctggttgtg 45




>37723_tca-mir-34:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 tggcagtgtggttagctggttgtgt 38
          |||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35




>37724_tca-mir-34:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 14 tggcagtgtggttagctggttgtgt 38
          |||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35




>38739_cte-mir-34:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 tggcagtgtggttagctggttgtg 37
          ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgtg 45




>34870_sko-mir-34:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tggcagtgtggttagctggttgt 36
          |||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgt 44




>38100_bma-mir-34:mirbase
          Length = 111

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 tggcagtgtggttagctggttgt 36
          |||||||||||||||||||||||
Sbjct: 23 tggcagtgtggttagctggttgt 45




>35054_api-mir-34:mirbase
          Length = 68

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 14 tggcagtgtggttagctggttgtgta 39
          |||||||||| |||||||||||||||
Sbjct: 1  tggcagtgtgattagctggttgtgta 26




>35358_ame-mir-34:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 13 ttggcagtgtggttagctggttgtgt 38
          |||||||||| |||||||||||||||
Sbjct: 20 ttggcagtgttgttagctggttgtgt 45




>38488_crm-mir-34:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ggcagtgtggttagctggttg 35
          |||||||||||||||||||||
Sbjct: 16 ggcagtgtggttagctggttg 36




>38127_cbr-mir-34:mirbase
          Length = 93

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ggcagtgtggttagctggttg 35
          |||||||||||||||||||||
Sbjct: 19 ggcagtgtggttagctggttg 39




>38268_cel-mir-34:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ggcagtgtggttagctggttg 35
          |||||||||||||||||||||
Sbjct: 17 ggcagtgtggttagctggttg 37




>38858_lgi-mir-34:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 14 tggcagtgtggttagctggt 33
          ||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggt 41