miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36180_der-mir-79:mirbase
Length = 92
Score = 174 bits (88), Expect = 7e-45
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 agctgccttgccattgctttggcgctttagctgtatgatagatttatactacttcataaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 agctgccttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 60
Query: 61 gctagattaccaaagcattggcttctgcagat 92
||||||||||||||||||||||||||||||||
Sbjct: 61 gctagattaccaaagcattggcttctgcagat 92
>36375_dme-mir-79:mirbase
Length = 97
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 agctgccttgccattgctttggcgctttagctgtatgatagatttatactacttcataaa 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4 agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 63
Query: 61 gctagattaccaaagcattggcttctgcag 90
||||||||||||||||||||||||||||||
Sbjct: 64 gctagattaccaaagcattggcttctgcag 93
>36376_dme-mir-79:mirbase
Length = 97
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 agctgccttgccattgctttggcgctttagctgtatgatagatttatactacttcataaa 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4 agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 63
Query: 61 gctagattaccaaagcattggcttctgcag 90
||||||||||||||||||||||||||||||
Sbjct: 64 gctagattaccaaagcattggcttctgcag 93
>37140_dse-mir-79:mirbase
Length = 92
Score = 159 bits (80), Expect = 4e-40
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 1 agctgccttgccattgctttggcgctttagctgtatgatagatttatactacttcataaa 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 agctgacttgccattgctttggcgctttagctgtatgatagatttaaactacttcataaa 60
Query: 61 gctagattaccaaagcattggcttctgcagat 92
|||||||||||||||||||||||| |||||||
Sbjct: 61 gctagattaccaaagcattggcttgtgcagat 92
>36851_dpe-mir-79:mirbase
Length = 77
Score = 121 bits (61), Expect = 9e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 67
Query: 75 gcattggct 83
|||||||||
Sbjct: 68 gcattggct 76
>36927_dps-mir-79:mirbase
Length = 84
Score = 121 bits (61), Expect = 9e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 13 tgctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaa 72
Query: 75 gcattggct 83
|||||||||
Sbjct: 73 gcattggct 81
>36102_dan-mir-79:mirbase
Length = 91
Score = 119 bits (60), Expect = 4e-28
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagatttaaa-tacttcataaagctagattaccaaa 73
Query: 75 gcattggcttctgcag 90
||||||||||| ||||
Sbjct: 74 gcattggcttccgcag 89
>36778_dmo-mir-79:mirbase
Length = 76
Score = 119 bits (60), Expect = 4e-28
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 8 ttgccattgctttggcgctttagctgtatgatagatttatactacttcataaagctagat 67
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 ttgccgttgctttggcgctttagctgtatgatagattta-aatacttcataaagctagat 59
Query: 68 taccaaagcattggct 83
||||||||||||||||
Sbjct: 60 taccaaagcattggct 75
>37354_dvi-mir-79:mirbase
Length = 92
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 9 tgccattgctttggcgctttagctgtatgatagatttatactacttcataaagctagatt 68
|||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 10 tgccgttgctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagatt 68
Query: 69 accaaagcattggct 83
|||||||||||||||
Sbjct: 69 accaaagcattggct 83
>37431_dwi-mir-79-1:mirbase
Length = 76
Score = 105 bits (53), Expect = 5e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagatttg-actacttcataaagctagattaccaaa 66
Query: 75 gcattggct 83
|||| ||||
Sbjct: 67 gcatgggct 75
>37432_dwi-mir-79-2:mirbase
Length = 76
Score = 105 bits (53), Expect = 5e-24
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagatttg-actacttcataaagctagattaccaaa 66
Query: 75 gcattggct 83
|||| ||||
Sbjct: 67 gcatgggct 75
>36268_dgr-mir-79:mirbase
Length = 76
Score = 93.7 bits (47), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 16 gctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaag 75
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagattt-gaatacttcataaagctagattaccaaag 67
Query: 76 cat 78
|||
Sbjct: 68 cat 70
>35186_aae-mir-79:mirbase
Length = 96
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 15 tgctttggcgctttagctgtatgatagaatt-taatatttcataaagctagattaccaaa 73
Query: 75 gcat 78
||||
Sbjct: 74 gcat 77
>35284_aga-mir-79:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 16 gctttggcgctttagctgtatgatag-atttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct: 17 gctttggcgctttagctgtatgatagaatttgaactatttcataaagctagattaccaaa 76
Query: 75 gcat 78
||||
Sbjct: 77 gcat 80
>36016_cqu-mir-79:mirbase
Length = 75
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 8 tgctttggcgctttagctgtatgatagaatt-taatatttcataaagctagattaccaaa 66
Query: 75 gcat 78
||||
Sbjct: 67 gcat 70
>35520_bmo-mir-9b:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 53 ttcataaagctagattaccaaagcat 78
||||||||||||||||||||||||||
Sbjct: 40 ttcataaagctagattaccaaagcat 15
>35533_bmo-mir-79:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 ttcataaagctagattaccaaagcat 78
||||||||||||||||||||||||||
Sbjct: 55 ttcataaagctagattaccaaagcat 80
>35346_ame-mir-9b:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 40 tcataaagctagattaccaaagca 17
>35360_ame-mir-79:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 64 tcataaagctagattaccaaagca 87
>37699_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>37700_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>38743_cte-mir-79:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tacttcataaagctagattaccaaagc 76
|||||||||||||||| ||||||||||
Sbjct: 55 tacttcataaagctaggttaccaaagc 81
>38729_cte-mir-9:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tacttcataaagctagattaccaaagc 76
|||||||||||||||| ||||||||||
Sbjct: 53 tacttcataaagctaggttaccaaagc 79
>38542_crm-mir-79:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 acttcataaagctagattaccaaagc 76
||||||||||||||| ||||||||||
Sbjct: 66 acttcataaagctaggttaccaaagc 91
>38099_bma-mir-9:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 cttcataaagctagattaccaaagc 76
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38107_bma-mir-79:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 cttcataaagctagattaccaaagc 76
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38190_cbr-mir-79:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 cttcataaagctagattaccaaagc 76
|||||||||||||| ||||||||||
Sbjct: 53 cttcataaagctaggttaccaaagc 77
>38623_ppc-mir-79:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 53 ttcataaagctagattaccaaagc 76
||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagc 79
>38316_cel-mir-79:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 53 ttcataaagctagattaccaaagc 76
||||||||||||| ||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagc 81
