miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36188_der-mir-184:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36393_dme-mir-184:mirbase
Length = 100
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 7 ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94
>36394_dme-mir-184:mirbase
Length = 100
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 7 ccggtgcattcgtacccttatcattctctcgccccgtgtgcacttaaagacaactggacg 66
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94
>37148_dse-mir-184:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>37224_dsi-mir-184:mirbase
Length = 88
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgca-ttgaagacaactggacg 59
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcatttaaagacaactggacg 60
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36862_dpe-mir-184:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 85/88 (96%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcattgaa-gacaactggacg 59
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 60
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36937_dps-mir-184:mirbase
Length = 100
Score = 143 bits (72), Expect = 2e-35
Identities = 85/88 (96%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcattgaa-gacaactggacg 59
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct: 7 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcattaaaagacaactggacg 66
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 67 gagaactgataagggctcgtatcaccaa 94
>37362_dvi-mir-184:mirbase
Length = 98
Score = 135 bits (68), Expect = 6e-33
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcat-tgaagacaactggacg 59
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct: 5 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 64
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 65 gagaactgataagggctcgtatcaccaa 92
>37441_dwi-mir-184:mirbase
Length = 88
Score = 135 bits (68), Expect = 6e-33
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcat-tgaagacaactggacg 59
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctagacaactggacg 60
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>36110_dan-mir-184:mirbase
Length = 88
Score = 131 bits (66), Expect = 9e-32
Identities = 85/89 (95%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcat--tgaagacaactggac 58
|||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcataatga-gacaactggac 59
Query: 59 ggagaactgataagggctcgtatcaccaa 87
|||||||||||||||||||||||||||||
Sbjct: 60 ggagaactgataagggctcgtatcaccaa 88
>36786_dmo-mir-184:mirbase
Length = 98
Score = 127 bits (64), Expect = 1e-30
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcat-tgaagacaactggacg 59
|||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||
Sbjct: 5 ccggtgcattcgtacccttatcattctcgcgccccgtgtgcatatctatacaactggacg 64
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 65 gagaactgataagggctcgtatcaccaa 92
>36277_dgr-mir-184:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtgcat-tgaagacaactggacg 59
|||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 1 ccggtgcattcgtacccttatcattctctcgccccgtgtggataactatacaactggacg 60
Query: 60 gagaactgataagggctcgtatcaccaa 87
||||||||||||||||||||||||||||
Sbjct: 61 gagaactgataagggctcgtatcaccaa 88
>35293_aga-mir-184:mirbase
Length = 82
Score = 81.8 bits (41), Expect = 7e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 ggtgcattcgtacccttatcattctctcgccccgtgtgcattgaagacaactggacggag 62
|||||| ||| |||||||||||||| ||||||||||||| || | ||||||||||||||
Sbjct: 1 ggtgcactcgaacccttatcattctttcgccccgtgtgctttcta-acaactggacggag 59
Query: 63 aactgataagggc 75
|||||||||||||
Sbjct: 60 aactgataagggc 72
>35196_aae-mir-184:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 ccggtgcattcgtacccttatcattctctcgccccgtg-tgcattgaagacaactggacg 59
|||||| |||||||||||||||||||| ||||||||| | |||| | | ||||||||
Sbjct: 1 ccggtgtattcgtacccttatcattcttgcgccccgtgttatattgttggcgactggacg 60
Query: 60 gagaactgataagggc 75
||||||||||||||||
Sbjct: 61 gagaactgataagggc 76
>35065_api-mir-184a:mirbase
Length = 65
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 16 ccttatcattctctcgccccgtgtgcattgaagacaactggacggagaactgataagggc 75
|||||||||||| ||||| ||||||| | | |||||||||||||||||||||||||||
Sbjct: 1 ccttatcattct-tcgccttgtgtgcaatttaaacaactggacggagaactgataagggc 59
Query: 76 tcgtat 81
| ||||
Sbjct: 60 tggtat 65
>37747_tca-mir-184:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 acaactggacggagaactgataagggct 76
||||||||||||||||||||||||||||
Sbjct: 44 acaactggacggagaactgataagggct 71
>37748_tca-mir-184:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 acaactggacggagaactgataagggct 76
||||||||||||||||||||||||||||
Sbjct: 44 acaactggacggagaactgataagggct 71
>38873_lgi-mir-184:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 aactggacggagaactgataagggct 76
||||||||||||||||||||||||||
Sbjct: 58 aactggacggagaactgataagggct 83
>35371_ame-mir-184:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 agacaactggacggagaactgataagggc 75
|||| ||||||||||||||||||||||||
Sbjct: 49 agacgactggacggagaactgataagggc 77
>36025_cqu-mir-184:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 attcgtacccttatcattctctcgccccgtgtgc-attgaagacaactggacggagaact 66
||||| |||||||||||||| ||||||||||| | ||| | |||||||||||||||
Sbjct: 5 attcgcacccttatcattctttcgccccgtgtactgttgtttgcgactggacggagaact 64
Query: 67 gataagggc 75
|||||||||
Sbjct: 65 gataagggc 73
>38757_cte-mir-184a:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 59 actggacggagaactgataagggc 82
>24844_cin-mir-184:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggctc 77
||||||||||||||||||||||||
Sbjct: 66 tggacggagaactgataagggctc 89
>34829_spu-mir-184:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggct 76
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>34885_sko-mir-184:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggct 76
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>34975_isc-mir-184:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggct 76
||||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggct 83
>35541_bmo-mir-184:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 50 actggacggagaactgataagggc 73
>37581_ngi-mir-184:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75
>37613_nlo-mir-184:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 52 actggacggagaactgataagggc 75
>37653_nvi-mir-184:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataagggc 75
||||||||||||||||||||||||
Sbjct: 54 actggacggagaactgataagggc 77
>24688_bfl-mir-184:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 ctggacggagaactgataagggc 75
|||||||||||||||||||||||
Sbjct: 60 ctggacggagaactgataagggc 82
>34335_dre-mir-184:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggc 75
||||||||||||||||||||||
Sbjct: 55 tggacggagaactgataagggc 76
>34336_dre-mir-184-2:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagggc 75
||||||||||||||||||||||
Sbjct: 49 tggacggagaactgataagggc 70
>25979_gga-mir-184:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>26487_tgu-mir-184:mirbase
Length = 112
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 81 tggacggagaactgataaggg 101
>26739_cfa-mir-184:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 42 tggacggagaactgataaggg 62
>27065_eca-mir-184:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 46 tggacggagaactgataaggg 66
>27408_mdo-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>27775_mml-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>28225_mne-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>28491_hsa-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>30259_ptr-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>30873_ppy-mir-184:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>31900_mmu-mir-184:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 45 tggacggagaactgataaggg 65
>32770_rno-mir-184:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 47 tggacggagaactgataaggg 67
>33252_bta-mir-184:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
>34014_ssc-mir-184:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 52 tggacggagaactgataaggg 72
>34616_fru-mir-184:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>34763_tni-mir-184:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataaggg 74
|||||||||||||||||||||
Sbjct: 53 tggacggagaactgataaggg 73
>25809_xtr-mir-184:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tggacggagaactgataagg 73
||||||||||||||||||||
Sbjct: 53 tggacggagaactgataagg 72
>35066_api-mir-184b:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgataa 71
||||||||||||||||||||
Sbjct: 37 actggacggagaactgataa 56
>38758_cte-mir-184b:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 actggacggagaactgata 70
|||||||||||||||||||
Sbjct: 56 actggacggagaactgata 74
