miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37442_dwi-mir-210:mirbase
Length = 86
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
Query: 63 acagcggctattgtaagaggcca 85
|||||||||||||||||||||||
Sbjct: 63 acagcggctattgtaagaggcca 85
>36189_der-mir-210:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 aaggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
Query: 61 tgacagcggctattgtaagaggccat 86
||||||||||||||||||||||||||
Sbjct: 61 tgacagcggctattgtaagaggccat 86
>36399_dme-mir-210:mirbase
Length = 100
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 aaggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 61
Query: 61 tgacagcggctattgtaagaggccat 86
||||||||||||||||||||||||||
Sbjct: 62 tgacagcggctattgtaagaggccat 87
>36400_dme-mir-210:mirbase
Length = 100
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 aaggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 61
Query: 61 tgacagcggctattgtaagaggccat 86
||||||||||||||||||||||||||
Sbjct: 62 tgacagcggctattgtaagaggccat 87
>37149_dse-mir-210:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 aaggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
Query: 61 tgacagcggctattgtaagaggccat 86
||||||||||||||||||||||||||
Sbjct: 61 tgacagcggctattgtaagaggccat 86
>37227_dsi-mir-210:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 aaggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaggtgcttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtg 60
Query: 61 tgacagcggctattgtaagaggccat 86
||||||||||||||||||||||||||
Sbjct: 61 tgacagcggctattgtaagaggccat 86
>36111_dan-mir-210:mirbase
Length = 86
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
Query: 67 cggctattgtaagaggccat 86
||||||||||||||||||||
Sbjct: 67 cggctattgtaagaggccat 86
>36863_dpe-mir-210:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtg 60
Query: 63 acagcggctattgtaagaggccat 86
||||||||||||||||||||||||
Sbjct: 61 acagcggctattgtaagaggccat 84
>36940_dps-mir-210a:mirbase
Length = 94
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtg 60
Query: 63 acagcggctattgtaagaggccat 86
||||||||||||||||||||||||
Sbjct: 61 acagcggctattgtaagaggccat 84
>36941_dps-mir-210b:mirbase
Length = 109
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 94 ggtacttattgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtg 35
Query: 63 acagcggctattgtaagaggccat 86
||||||||||||||||||||||||
Sbjct: 34 acagcggctattgtaagaggccat 11
>37363_dvi-mir-210:mirbase
Length = 84
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 3 ggtacttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtg 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggtacttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtg 60
Query: 63 acagcggctattgtaagag 81
|||||||||||||||||||
Sbjct: 61 acagcggctattgtaagag 79
>36787_dmo-mir-210:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacag 66
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7 cttattgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacag 66
Query: 67 cggctattgtaagaggcca 85
|||||||||||||| ||||
Sbjct: 67 cggctattgtaagatgcca 85
>35374_ame-mir-210:mirbase
Length = 85
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 72 at 73
||
Sbjct: 71 at 72
>37582_ngi-mir-210:mirbase
Length = 85
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 72 at 73
||
Sbjct: 71 at 72
>37655_nvi-mir-210:mirbase
Length = 85
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
Query: 72 at 73
||
Sbjct: 71 at 72
>36278_dgr-mir-210:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 72/77 (93%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 7 cttattgcagctgctggccactgcacaagattagacttaa--gactcttgtgcgtgtgac 64
||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 5 cttattggagctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgac 64
Query: 65 agcggctattgtaagag 81
|||||||||||||||||
Sbjct: 65 agcggctattgtaagag 81
>35199_aae-mir-210:mirbase
Length = 68
Score = 91.7 bits (46), Expect = 8e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
Query: 70 ctattg 75
||||||
Sbjct: 63 ctattg 68
>36028_cqu-mir-210:mirbase
Length = 68
Score = 91.7 bits (46), Expect = 8e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct: 4 attgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacgg 62
Query: 70 ctattg 75
||||||
Sbjct: 63 ctattg 68
>35543_bmo-mir-210:mirbase
Length = 92
Score = 79.8 bits (40), Expect = 3e-16
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 13 gcagctgctggccactgcacaagattag---acttaagactcttgtgcgtgtgacagcgg 69
|||||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct: 14 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 73
Query: 70 ctattg 75
||||||
Sbjct: 74 ctattg 79
>35295_aga-mir-210:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 attgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcgg 69
||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 8 attgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacgg 66
Query: 70 ctatt 74
|||||
Sbjct: 67 ctatt 71
>37753_tca-mir-210:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 1e-12
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 69 gctattgt 76
||||||||
Sbjct: 66 gctattgt 73
>37754_tca-mir-210:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 1e-12
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 69 gctattgt 76
||||||||
Sbjct: 66 gctattgt 73
>37564_lmi-mir-210:mirbase
Length = 62
Score = 63.9 bits (32), Expect = 2e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
Query: 72 at 73
||
Sbjct: 61 at 62
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggcta 72
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 tgtgcgtgtgacagcggct 71
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
