miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36193_der-mir-274:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggatta 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 60
Query: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>36409_dme-mir-274:mirbase
Length = 100
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggatta 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 63
Query: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
||||||||||||||||||||| |||||||||||||||
Sbjct: 64 ctcgtttttgcgatcacaaattatgaaattgcagcaa 100
>36410_dme-mir-274:mirbase
Length = 100
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggatta 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 63
Query: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
||||||||||||||||||||| |||||||||||||||
Sbjct: 64 ctcgtttttgcgatcacaaattatgaaattgcagcaa 100
>37153_dse-mir-274:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggatta 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcaccaggatta 60
Query: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>36115_dan-mir-274:mirbase
Length = 96
Score = 103 bits (52), Expect = 2e-23
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 3 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgc-caggattac 61
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
Query: 62 tcgtttttgcgatcacaaatcatgaaattgcagcaa 97
||||||||||||||||||||| ||||||||||||||
Sbjct: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
>36867_dpe-mir-274:mirbase
Length = 94
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 6 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggattactcgt 65
||||||||| ||||||||||||||||||||||||| || ||| || ||||| |||||||
Sbjct: 6 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 63
Query: 66 ttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 64 ttttgcgatcac-aatactgaaattgcagcaa 94
>36946_dps-mir-274:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 3e-16
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 6 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggattactcgt 65
||||||||| ||||||||||||||||||||||||| || ||| || ||||| |||||||
Sbjct: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
Query: 66 ttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
>37367_dvi-mir-274:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 tgttgcagtttcgttttgtgaccgacactaacgggta 39
||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
|||||||||||||||||||||||| ||||||||||
Sbjct: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
>37446_dwi-mir-274:mirbase
Length = 105
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 gttgcagtttcgttttgtgaccgacactaacgggta 39
||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gttgcagtttcattttgtgaccgacactaacgggta 36
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
|||||||||||||||||||||||| ||||||||||
Sbjct: 70 ttactcgtttttgcgatcacaaattctgaaattgca 105
>36790_dmo-mir-274:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tttcgttttgtgaccgacactaacgggta 39
||||| |||||||||||||||||||||||
Sbjct: 1 tttcggtttgtgaccgacactaacgggta 29
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tactcgtttttgcgatcacaaat 81
|||||||||||||||||||||||
Sbjct: 58 tactcgtttttgcgatcacaaat 80
>36282_dgr-mir-274:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 ttactcgtttttgcgatcacaaat 81
||||||||||||||||||||||||
Sbjct: 57 ttactcgtttttgcgatcacaaat 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tttgtgaccgacactaacgggta 39
|||||||||||||||||||||||
Sbjct: 5 tttgtgaccgacactaacgggta 27
