miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36201_der-mir-281-1:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90




>37161_dse-mir-281-1:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90




>37238_dsi-mir-281:mirbase
          Length = 90

 Score =  163 bits (82), Expect = 3e-41
 Identities = 88/90 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaaagcatttaatatcactgt 60

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90




>36424_dme-mir-281-1:mirbase
          Length = 90

 Score =  155 bits (78), Expect = 6e-39
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90




>36425_dme-mir-281-1:mirbase
          Length = 90

 Score =  155 bits (78), Expect = 6e-39
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90




>36290_dgr-mir-281-1:mirbase
          Length = 88

 Score =  109 bits (55), Expect = 3e-25
 Identities = 82/90 (91%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          |||||||||||||||||||||||||||||||||||||||| ||  ||||  ||  |||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||| |||||||
Sbjct: 59 catggaattgctctctttgtatgatattcg 88




>36123_dan-mir-281-1:mirbase
          Length = 86

 Score =  103 bits (52), Expect = 2e-23
 Identities = 82/90 (91%), Gaps = 4/90 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          |||||| ||||||||||||||||||||||||||||||||| || | |   ||| ||||||
Sbjct: 1  cgaatacgtgaataaagagagctgtccgtcgacagtccag-atacct---ataacactgt 56

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||||
Sbjct: 57 catggaattgctctctttgtataatattcg 86




>37375_dvi-mir-281-1:mirbase
          Length = 88

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 82/91 (90%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccag-aattcatttaatatcactg 59
          |||||||||||||||||||||||||||||||||||||||| ||   || ||||   ||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagtaacaaatgtaat---actg 57

                                         
Query: 60 tcatggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||| |||||||
Sbjct: 58 tcatggaattgctctctttgtatgatattcg 88




>36798_dmo-mir-281-1:mirbase
          Length = 88

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 80/90 (88%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
          |||||||||||||||||||||||||||||||||||||||| |   |||   ||  |||||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58

                                        
Query: 61 catggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||| |||||||
Sbjct: 59 catggaattgctctctttgtatgatattcg 88




>37454_dwi-mir-281-1:mirbase
          Length = 90

 Score = 91.7 bits (46), Expect = 8e-20
 Identities = 82/92 (89%), Gaps = 4/92 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtccag--aattcatttaatatcact 58
          ||||||||||||||||||||||||||||||||||||||||  ||   ||||  ||  |||
Sbjct: 1  cgaataagtgaataaagagagctgtccgtcgacagtccagttaaacgattt--taaaact 58

                                          
Query: 59 gtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||| |||||||
Sbjct: 59 gtcatggaattgctctctttgtatgatattcg 90




>36875_dpe-mir-281-1:mirbase
          Length = 88

 Score = 89.7 bits (45), Expect = 3e-19
 Identities = 81/91 (89%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtcca-gaattcatttaatatcactg 59
          |||||| |||||||||||||||||||||||||||||| | | |   ||||||||   |||
Sbjct: 1  cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57

                                         
Query: 60 tcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||
Sbjct: 58 tcatggaattgctctctttgtataatattcg 88




>36955_dps-mir-281-1:mirbase
          Length = 88

 Score = 89.7 bits (45), Expect = 3e-19
 Identities = 81/91 (89%), Gaps = 4/91 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgaataagtgaataaagagagctgtccgtcgacagtcca-gaattcatttaatatcactg 59
          |||||| |||||||||||||||||||||||||||||| | | |   ||||||||   |||
Sbjct: 1  cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57

                                         
Query: 60 tcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||
Sbjct: 58 tcatggaattgctctctttgtataatattcg 88




>36291_dgr-mir-281-2:mirbase
          Length = 93

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgtataatattcg 93




>36799_dmo-mir-281-2:mirbase
          Length = 93

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgtataatattcg 93




>36876_dpe-mir-281-2:mirbase
          Length = 91

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgtataatattcg 91




>36956_dps-mir-281-2:mirbase
          Length = 91

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgtataatattcg 91




>37376_dvi-mir-281-2:mirbase
          Length = 91

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgtataatattcg 91




>37455_dwi-mir-281-2:mirbase
          Length = 97

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 63 actgtcatggaattgctctctttgtataatattcg 97




>37531_dya-mir-281-2:mirbase
          Length = 92

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          |||||||||||||||||||||||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgtataatattcg 92




>36124_dan-mir-281-2:mirbase
          Length = 94

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||| |||||
Sbjct: 60 actgtcatggaattgctctctttgtataacattcg 94




>36202_der-mir-281-2:mirbase
          Length = 92

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92




>36426_dme-mir-281-2:mirbase
          Length = 92

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92




>36427_dme-mir-281-2:mirbase
          Length = 92

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92




>37162_dse-mir-281-2:mirbase
          Length = 92

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
          ||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92




>35210_aae-mir-281:mirbase
          Length = 97

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 tcactgtcatggaattgctctcttt 78
          |||||||||||||||||||||||||
Sbjct: 54 tcactgtcatggaattgctctcttt 78



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 aataaagagagctgtccgtcgacagt 36
          ||||||||||||| ||||||||||||
Sbjct: 17 aataaagagagctatccgtcgacagt 42




>35305_aga-mir-281:mirbase
          Length = 102

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 tcactgtcatggaattgctctcttt 78
          |||||||||||||||||||||||||
Sbjct: 53 tcactgtcatggaattgctctcttt 77



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 aataaagagagctgtccgtcgacagt 36
          ||||||||||||| ||||||||||||
Sbjct: 16 aataaagagagctatccgtcgacagt 41




>36038_cqu-mir-281:mirbase
          Length = 107

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 54 tcactgtcatggaattgctctcttt 78
          |||||||||||||||||||||||||
Sbjct: 59 tcactgtcatggaattgctctcttt 83



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 aataaagagagctgtccgtcgacagt 36
          ||||||||||||| ||||||||||||
Sbjct: 22 aataaagagagctatccgtcgacagt 47




>35386_ame-mir-281:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 55 cactgtcatggaattgctctctttgta 81
          |||||||||||| ||||||||||||||
Sbjct: 58 cactgtcatggagttgctctctttgta 84




>38122_bma-mir-281:mirbase
          Length = 91

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 actgtcatggaattgctctcttt 78
          |||||||||||||||||||||||
Sbjct: 51 actgtcatggaattgctctcttt 73




>25355_odi-mir-281:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 56 actgtcatggaattgctctctt 77
          ||||||||||||||||||||||
Sbjct: 64 actgtcatggaattgctctctt 85




>37589_ngi-mir-281:mirbase
          Length = 73

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 cactgtcatggaattgctctctttgt 80
          |||||||||||| |||||||||||||
Sbjct: 44 cactgtcatggacttgctctctttgt 69




>37620_nlo-mir-281:mirbase
          Length = 73

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 cactgtcatggaattgctctctttgt 80
          |||||||||||| |||||||||||||
Sbjct: 44 cactgtcatggacttgctctctttgt 69




>37663_nvi-mir-281:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 cactgtcatggaattgctctctttgt 80
          |||||||||||| |||||||||||||
Sbjct: 58 cactgtcatggacttgctctctttgt 83




>24703_bfl-mir-281:mirbase
          Length = 85

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 cactgtcatggaattgctctcttt 78
          |||||||||||| |||||||||||
Sbjct: 56 cactgtcatggagttgctctcttt 79




>35081_api-mir-281:mirbase
          Length = 62

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 cactgtcatggaattgctctcttt 78
          |||||||||||| |||||||||||
Sbjct: 37 cactgtcatggagttgctctcttt 60




>35557_bmo-mir-281:mirbase
          Length = 77

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 cactgtcatggaattgctctcttt 78
          |||||||||||| |||||||||||
Sbjct: 45 cactgtcatggagttgctctcttt 68




>37781_tca-mir-281:mirbase
          Length = 67

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 cactgtcatggaattgctctcttt 78
          |||||||||||| |||||||||||
Sbjct: 42 cactgtcatggagttgctctcttt 65




>37782_tca-mir-281:mirbase
          Length = 67

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 55 cactgtcatggaattgctctcttt 78
          |||||||||||| |||||||||||
Sbjct: 42 cactgtcatggagttgctctcttt 65