miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37163_dse-mir-282:mirbase
Length = 97
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ttccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacat 63
Query: 61 agcctataagaggttaggtgtaccaaggtg 90
||||||||||||||||||||||||||||||
Sbjct: 64 agcctataagaggttaggtgtaccaaggtg 93
>36203_der-mir-282:mirbase
Length = 97
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 4 ttccttataaatctagcctctactaggctttgtctgtgcattcaaaagccgatcagacat 63
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||||||||||||||||||||||||
Sbjct: 64 agcctataagaggttaggtgtaccaagg 91
>36428_dme-mir-282:mirbase
Length = 97
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ttccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacat 63
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||||||||||||||||||||||||
Sbjct: 64 agcctataagaggttaggtgtaccaagg 91
>36429_dme-mir-282:mirbase
Length = 97
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ttccttctaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacat 63
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||||||||||||||||||||||||
Sbjct: 64 agcctataagaggttaggtgtaccaagg 91
>37239_dsi-mir-282:mirbase
Length = 97
Score = 159 bits (80), Expect = 4e-40
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 ttccttttaaatctagcctctactaggctttgtctgtgcattcgaaagccgatcagacat 63
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||||||||||||||||||||||||
Sbjct: 64 agcctataagaggttaggtgtaccaagg 91
>36125_dan-mir-282:mirbase
Length = 90
Score = 151 bits (76), Expect = 1e-37
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1 ttccttatagatctagcctctactaggctttgtctgtgcattcgaaagtcgatcagacat 60
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||||||||||||||||||||||||
Sbjct: 61 agcctataagaggttaggtgtaccaagg 88
>36877_dpe-mir-282:mirbase
Length = 91
Score = 133 bits (67), Expect = 2e-32
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcatacgaaagcc-gatcagacata 61
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 62 gcctataagaggttaggtgtaccaagg 88
|||||||||||||||||||||||||||
Sbjct: 63 gcctataagaggttaggtgtaccaagg 89
>36957_dps-mir-282:mirbase
Length = 94
Score = 133 bits (67), Expect = 2e-32
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcatacgaaagcc-gatcagacata 61
||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
Query: 62 gcctataagaggttaggtgtaccaagg 88
|||||||||||||||||||||||||||
Sbjct: 63 gcctataagaggttaggtgtaccaagg 89
>37377_dvi-mir-282:mirbase
Length = 94
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||
Sbjct: 4 ttccttataaatctagcctctactaggctttgtctgtgcattcgatatacggtcagacat 63
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||| ||||||||||||||||||||
Sbjct: 64 agcctatgagaggttaggtgtaccaagg 91
>36800_dmo-mir-282:mirbase
Length = 91
Score = 111 bits (56), Expect = 9e-26
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacat 60
||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct: 2 ttccttataaatctagcctctactaggctttgtctgtgcatttgatataagatcagacat 61
Query: 61 agcctataagaggttaggtgtaccaagg 88
||||||| |||||||||||||| |||||
Sbjct: 62 agcctatgagaggttaggtgtagcaagg 89
>37456_dwi-mir-282:mirbase
Length = 87
Score = 93.7 bits (47), Expect = 2e-20
Identities = 77/87 (88%), Gaps = 5/87 (5%)
Strand = Plus / Plus
Query: 2 tccttataaatctagcctctactaggctttgtctgtgcatacgaaagccgatcagacata 61
|||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 3 tccttataaatctagcctctactaggctttgtctgtgcatttgga-----ttcagacata 57
Query: 62 gcctataagaggttaggtgtaccaagg 88
|||||| ||||||||||||||||||||
Sbjct: 58 gcctatgagaggttaggtgtaccaagg 84
>36292_dgr-mir-282:mirbase
Length = 94
Score = 83.8 bits (42), Expect = 2e-17
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 ttccttataaatctagcctctactaggctttgtctgtgca--tacgaaagccgatcagac 58
|||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct: 1 ttccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagac 60
Query: 59 atagcctataagaggttaggtgtac 83
||||||||| |||||||||||||||
Sbjct: 61 atagcctatgagaggttaggtgtac 85
>35211_aae-mir-282-1:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35212_aae-mir-282-2:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 29 aatctagcctctcctaggctttgtctgt 56
>35306_aga-mir-282:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 12 aatctagcctcttctaggctttgtctgt 39
>37783_tca-mir-282:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgtg 38
|||||||| ||||||||||||||||
Sbjct: 9 tagcctctcctaggctttgtctgtg 33
>37784_tca-mir-282:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgtg 38
|||||||| ||||||||||||||||
Sbjct: 9 tagcctctcctaggctttgtctgtg 33
>35387_ame-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgt 37
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
>37621_nlo-mir-282:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgt 37
|||||||| |||||||||||||||
Sbjct: 6 tagcctctcctaggctttgtctgt 29
>37664_nvi-mir-282:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgt 37
|||||||| |||||||||||||||
Sbjct: 19 tagcctctcctaggctttgtctgt 42
