miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37169_dse-mir-288:mirbase
Length = 97
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcac 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
>37245_dsi-mir-288:mirbase
Length = 97
Score = 182 bits (92), Expect = 3e-47
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcac 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
>36209_der-mir-288:mirbase
Length = 97
Score = 174 bits (88), Expect = 7e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 cggtcatgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 cggtcatgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcac 60
Query: 61 gttggtttcatgtcgatttcatttcatgacacggcc 96
|||||||||||||||||||||||||| |||||||||
Sbjct: 61 gttggtttcatgtcgatttcatttcaggacacggcc 96
>36439_dme-mir-288:mirbase
Length = 97
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 5 catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96
>36963_dps-mir-288:mirbase
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | | || ||||||||||||||||||||||||| |||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggcc 95
>36806_dmo-mir-288:mirbase
Length = 96
Score = 137 bits (69), Expect = 2e-33
Identities = 84/89 (94%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | |||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 7 gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66
Query: 68 tcatgtcgatttcatttcatgacacggcc 96
|||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggcc 95
>36131_dan-mir-288:mirbase
Length = 92
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | |||| | |||||||||||||||||||||| |||||||||||
Sbjct: 1 catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 61 gtttcatgtcgatttcatttcatgacacggcc 92
>36882_dpe-mir-288:mirbase
Length = 96
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 5 catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64
||||||||||||||| | | || ||||||||||||| ||||||||||| |||||||||||
Sbjct: 4 catgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacgttg 63
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||||
Sbjct: 64 gtttcatgtcgatttcatttcatgacacggcc 95
>37383_dvi-mir-288:mirbase
Length = 97
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 8 gtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttggtt 67
|||||||||||| | |||| |||||| |||||||||||||||| ||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 68 tcatgtcgatttcatttcatgacacggcc 96
|||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggcc 96
>36300_dgr-mir-288:mirbase
Length = 96
Score = 115 bits (58), Expect = 6e-27
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 7 tgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttggt 66
||||||||||||| | ||| ||| || ||||||||||||||||| |||||||||||||
Sbjct: 6 tgtcgtaattagctgtgcagaacgtagctggcgataattaatgacgttggtcacgttggt 65
Query: 67 ttcatgtcgatttcatttcatgacacggcc 96
||||||||||||||||||||||||||||||
Sbjct: 66 ttcatgtcgatttcatttcatgacacggcc 95
>37462_dwi-mir-288:mirbase
Length = 94
Score = 115 bits (58), Expect = 6e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91
Query: 95 cc 96
||
Sbjct: 92 cc 93
