miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36217_der-mir-310a:mirbase
          Length = 88

 Score =  143 bits (72), Expect = 2e-35
 Identities = 84/88 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  acacaaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcac 60
          ||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 1  acacaaatatttgcaggacgggtcgtgtgtcaatgtattgatctcttagctatattgcac 60

                                      
Query: 61 acttcccgccctttaaatgtccagtgtt 88
          ||||||||||||||||||||||||||||
Sbjct: 61 acttcccgccctttaaatgtccagtgtt 88




>36457_dme-mir-310:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 3e-28
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                      
Query: 5  aaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcacactt 64
          ||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct: 6  aaacatttgcagggcgggtcgtgtgtcagtgtatttatatcttagctatattgcacactt 65

                                  
Query: 65 cccgccctttaaatgtccagtgtt 88
          |||| |||||||||||||| ||||
Sbjct: 66 cccggcctttaaatgtccaatgtt 89




>36458_dme-mir-310:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 3e-28
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                      
Query: 5  aaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcacactt 64
          ||||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct: 6  aaacatttgcagggcgggtcgtgtgtcagtgtatttatatcttagctatattgcacactt 65

                                  
Query: 65 cccgccctttaaatgtccagtgtt 88
          |||| |||||||||||||| ||||
Sbjct: 66 cccggcctttaaatgtccaatgtt 89




>37177_dse-mir-310:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 3e-28
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                      
Query: 5  aaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcacactt 64
          ||||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||
Sbjct: 6  aaacatttgcaggacgggtcgtgtgtcagtgtatttacttcttaactatattgcacactt 65

                                  
Query: 65 cccgccctttaaatgtccagtgtt 88
          |||| |||||||||||||| ||||
Sbjct: 66 cccggcctttaaatgtccaatgtt 89




>37253_dsi-mir-310:mirbase
          Length = 89

 Score =  119 bits (60), Expect = 3e-28
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                      
Query: 5  aaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcacactt 64
          ||||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||
Sbjct: 6  aaacatttgcaggacgggtcgtgtgtcagtatatttacttcttagctatattgcacactt 65

                                  
Query: 65 cccgccctttaaatgtccagtgtt 88
          |||| |||||||||||||| ||||
Sbjct: 66 cccggcctttaaatgtccaatgtt 89




>36218_der-mir-310b:mirbase
          Length = 88

 Score =  103 bits (52), Expect = 2e-23
 Identities = 79/88 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  acacaaacatttgcaggacgggtcgtgtggcagtgtattgatttcttagctatattgcac 60
          ||||||| |||||||||||||||||||||  | |||||  || | |||||||||||||||
Sbjct: 1  acacaaatatttgcaggacgggtcgtgtgttaatgtataaatctattagctatattgcac 60

                                      
Query: 61 acttcccgccctttaaatgtccagtgtt 88
          ||||||||| ||||||||||||||||||
Sbjct: 61 acttcccgctctttaaatgtccagtgtt 88