miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36220_der-mir-311b-1:mirbase
          Length = 75

 Score =  125 bits (63), Expect = 5e-30
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  caattttcggctgtggattgggctagtactgtgattttagcattaagtattgcacattcc 62
          ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 1  caattttcggctgtggagtgggctagtactgtgattttaacattgagtattgcacattcc 60

                         
Query: 63 ccagcctgaaagtgt 77
          |||||||||||||||
Sbjct: 61 ccagcctgaaagtgt 75




>36221_der-mir-311b-2:mirbase
          Length = 75

 Score =  125 bits (63), Expect = 5e-30
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 3  caattttcggctgtggattgggctagtactgtgattttagcattaagtattgcacattcc 62
          ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 1  caattttcggctgtggagtgggctagtactgtgattttaacattgagtattgcacattcc 60

                         
Query: 63 ccagcctgaaagtgt 77
          |||||||||||||||
Sbjct: 61 ccagcctgaaagtgt 75




>36141_dan-mir-311b:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 agtattgcacattccccagcctg 70
          |||||||||||||||||||||||
Sbjct: 44 agtattgcacattccccagcctg 66




>36222_der-mir-311c:mirbase
          Length = 80

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 50 tattgcacattccccagcctgaaa 73
          |||||||||||| |||||||||||
Sbjct: 50 tattgcacattcaccagcctgaaa 73