miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37554_dya-mir-316-2:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36227_der-mir-316:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
||||||||||||||||| |||||||||||
Sbjct: 61 agggaaaaaggcgtattcactatgagttt 89
>37183_dse-mir-316:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37259_dsi-mir-316:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36469_dme-mir-316:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36470_dme-mir-316:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36145_dan-mir-316:mirbase
Length = 89
Score = 153 bits (77), Expect = 2e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttaattcaaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36891_dpe-mir-316:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36975_dps-mir-316:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37472_dwi-mir-316:mirbase
Length = 89
Score = 145 bits (73), Expect = 6e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36310_dgr-mir-316:mirbase
Length = 87
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 3 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 61
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 62 gaaaaaggcgtatttactatga 83
>37395_dvi-mir-316:mirbase
Length = 88
Score = 123 bits (62), Expect = 2e-29
Identities = 78/82 (95%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84
>36816_dmo-mir-316:mirbase
Length = 87
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
||||||||||||||||||||||||||||||| ||||| | || ||||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84
>35226_aae-mir-316:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 15 gatttgtctttttccgcttactg 37
>36046_cqu-mir-316:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 32 gatttgtctttttccgcttactg 54
