miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37553_dya-mir-316-1:mirbase
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36227_der-mir-316:mirbase
          Length = 89

 Score =  168 bits (85), Expect = 4e-43
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          ||||||||||||||||| |||||||||||
Sbjct: 61 agggaaaaaggcgtattcactatgagttt 89




>37183_dse-mir-316:mirbase
          Length = 89

 Score =  168 bits (85), Expect = 4e-43
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>37259_dsi-mir-316:mirbase
          Length = 89

 Score =  168 bits (85), Expect = 4e-43
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36469_dme-mir-316:mirbase
          Length = 89

 Score =  161 bits (81), Expect = 1e-40
 Identities = 87/89 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36470_dme-mir-316:mirbase
          Length = 89

 Score =  161 bits (81), Expect = 1e-40
 Identities = 87/89 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36145_dan-mir-316:mirbase
          Length = 89

 Score =  153 bits (77), Expect = 2e-38
 Identities = 86/89 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgtttaattcaaacaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36891_dpe-mir-316:mirbase
          Length = 89

 Score =  145 bits (73), Expect = 6e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||| |||  | ||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36975_dps-mir-316:mirbase
          Length = 89

 Score =  145 bits (73), Expect = 6e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||| |||  | ||||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>37472_dwi-mir-316:mirbase
          Length = 89

 Score =  145 bits (73), Expect = 6e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
          |||||||||||||||||||||||||||||||||||||||| |||| |  |||||||||||
Sbjct: 1  aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60

                                       
Query: 61 agggaaaaaggcgtatttactatgagttt 89
          |||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89




>36310_dgr-mir-316:mirbase
          Length = 87

 Score =  123 bits (62), Expect = 2e-29
 Identities = 78/82 (95%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
          ||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 3  ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 61

                                
Query: 64 gaaaaaggcgtatttactatga 85
          ||||||||||||||||||||||
Sbjct: 62 gaaaaaggcgtatttactatga 83




>37395_dvi-mir-316:mirbase
          Length = 88

 Score =  123 bits (62), Expect = 2e-29
 Identities = 78/82 (95%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
          ||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct: 4  ttctagtcgatttgtctttttccgcttactggcgtttta-ttgagcaacgacaggaaagg 62

                                
Query: 64 gaaaaaggcgtatttactatga 85
          ||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84




>36816_dmo-mir-316:mirbase
          Length = 87

 Score =  107 bits (54), Expect = 1e-24
 Identities = 76/82 (92%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
          ||||||||||||||||||||||||||||||| ||||| | || ||||||| |||| ||||
Sbjct: 4  ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62

                                
Query: 64 gaaaaaggcgtatttactatga 85
          ||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84




>35226_aae-mir-316:mirbase
          Length = 91

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 gatttgtctttttccgcttactg 34
          |||||||||||||||||||||||
Sbjct: 15 gatttgtctttttccgcttactg 37




>36046_cqu-mir-316:mirbase
          Length = 139

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 gatttgtctttttccgcttactg 34
          |||||||||||||||||||||||
Sbjct: 32 gatttgtctttttccgcttactg 54