miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36229_der-mir-318:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>36473_dme-mir-318:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>36474_dme-mir-318:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>37185_dse-mir-318:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>37261_dsi-mir-318:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>37474_dwi-mir-318-1:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactaca--agcatcactgggctttgttt 58
|||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>37475_dwi-mir-318-2:mirbase
Length = 69
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactaca--agcatcactgggctttgttt 58
|||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>36894_dpe-mir-318:mirbase
Length = 68
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||| ||| |||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36977_dps-mir-318:mirbase
Length = 68
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
|||||||||| ||| |||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36312_dgr-mir-318:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcac-tacaagcatcactgggctttgttta 59
|||||||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>36818_dmo-mir-318:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcac-tacaagcatcactgggctttgttta 59
|||||||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>37397_dvi-mir-318:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 8e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcgcac-tacaagcatcactgggctttgttta 59
|||||||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>36147_dan-mir-318:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 agcatcactgggctttgtttatctcat 65
|||||||||||||||||||||||||||
Sbjct: 40 agcatcactgggctttgtttatctcat 66
