miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36278_dgr-mir-210:mirbase
Length = 86
Score = 79.8 bits (40), Expect = 2e-16
Identities = 59/63 (93%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgatt-aaaagactcttgtgcgtgtgacagcggc 59
||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 13 agctgctggccactgcacaagattag--attcaaaagactcttgtgcgtgtgacagcggc 70
Query: 60 tat 62
|||
Sbjct: 71 tat 73
>35374_ame-mir-210:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 5e-14
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 14 agctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcggct 70
Query: 61 at 62
||
Sbjct: 71 at 72
>37582_ngi-mir-210:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 5e-14
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 14 agctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcggct 70
Query: 61 at 62
||
Sbjct: 71 at 72
>37655_nvi-mir-210:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 5e-14
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 14 agctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcggct 70
Query: 61 at 62
||
Sbjct: 71 at 72
>36863_dpe-mir-210:mirbase
Length = 84
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/62 (91%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 13 agctgctggccactgcacaagattag--atttaa-gactcttgtgcgtgtgacagcggct 69
Query: 61 at 62
||
Sbjct: 70 at 71
>36940_dps-mir-210a:mirbase
Length = 94
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/62 (91%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 13 agctgctggccactgcacaagattag--atttaa-gactcttgtgcgtgtgacagcggct 69
Query: 61 at 62
||
Sbjct: 70 at 71
>36941_dps-mir-210b:mirbase
Length = 109
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/62 (91%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 82 agctgctggccactgcacaagattag--atttaa-gactcttgtgcgtgtgacagcggct 26
Query: 61 at 62
||
Sbjct: 25 at 24
>37753_tca-mir-210:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 9 agctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcggct 68
Query: 61 at 62
||
Sbjct: 69 at 70
>37754_tca-mir-210:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 7e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 9 agctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcggct 68
Query: 61 at 62
||
Sbjct: 69 at 70
>36111_dan-mir-210:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>36189_der-mir-210:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>36399_dme-mir-210:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 16 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 72
Query: 61 at 62
||
Sbjct: 73 at 74
>36400_dme-mir-210:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 16 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 72
Query: 61 at 62
||
Sbjct: 73 at 74
>37149_dse-mir-210:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>37227_dsi-mir-210:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>37442_dwi-mir-210:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>37517_dya-mir-210:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 1e-11
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattagactt---aagactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>36787_dmo-mir-210:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct: 15 agctgctggccactgcacaagattag--actcaa-gactcttgtgcgtgtgacagcggct 71
Query: 61 at 62
||
Sbjct: 72 at 73
>37363_dvi-mir-210:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 4e-11
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
||||||||| |||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct: 13 agctgctggccactgcacaagattag--actcaa-gactcttgtgcgtgtgacagcggct 69
Query: 61 at 62
||
Sbjct: 70 at 71
>35543_bmo-mir-210:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 37 actcttgtgcgtgtgacagcggctat 62
||||||||||||||||||||||||||
Sbjct: 52 actcttgtgcgtgtgacagcggctat 77
>35199_aae-mir-210:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 7e-07
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
|||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct: 9 agctgctgaccactgcacaagattag--attat--gactcttgtgcgtgtgacaacggct 64
Query: 61 at 62
||
Sbjct: 65 at 66
>36028_cqu-mir-210:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 7e-07
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
|||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct: 9 agctgctgaccactgcacaagattag--attat--gactcttgtgcgtgtgacaacggct 64
Query: 61 at 62
||
Sbjct: 65 at 66
>35295_aga-mir-210:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 gactcttgtgcgtgtgacagcggctat 62
||||||||||||||||||| |||||||
Sbjct: 44 gactcttgtgcgtgtgacaacggctat 70
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggcta 61
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggcta 61
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggcta 61
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggcta 61
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggcta 61
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 tgtgcgtgtgacagcggct 60
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
