miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37642_nvi-mir-29b:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 aagaattaagatagcagaggtactgacttcggtgcgtgctggggttaccgatcaagcgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aagaattaagatagcagaggtactgacttcggtgcgtgctggggttaccgatcaagcgcc 65
Query: 61 tagcaccatttgaaatcagtactactcgtcttag 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 tagcaccatttgaaatcagtactactcgtcttag 99
>35355_ame-mir-29b:mirbase
Length = 100
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 16 agaggtactgacttcggtgcgtgctggggttaccgatcaagcgcctagcaccatttgaaa 75
||||||||||||||| |||||||||||||| | | || | |||||||||||||||||
Sbjct: 22 agaggtactgacttctatgcgtgctggggtttgtgctaaatctcctagcaccatttgaaa 81
Query: 76 tcagtactactcgtcttag 94
|||||||||||| ||||||
Sbjct: 82 tcagtactactcttcttag 100
>38855_lgi-mir-29:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80
>38735_cte-mir-29a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80
>24655_bfl-mir-29b:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 61 ctagcaccatttgaaatcagt 81
>25451_pma-mir-29a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 49 ctagcaccatttgaaatcagt 69
>25453_pma-mir-29c:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 54 ctagcaccatttgaaatcagt 74
>25728_xtr-mir-29b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>25912_gga-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>25913_gga-mir-29b-2:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>26419_tgu-mir-29b-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 40 ctagcaccatttgaaatcagt 60
>26420_tgu-mir-29b-2:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 40 ctagcaccatttgaaatcagt 60
>26649_cfa-mir-29b-1:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 42 ctagcaccatttgaaatcagt 62
>26650_cfa-mir-29b-2:mirbase
Length = 66
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 43 ctagcaccatttgaaatcagt 63
>26971_eca-mir-29b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>26972_eca-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>27355_mdo-mir-29b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 54 ctagcaccatttgaaatcagt 74
>27494_age-mir-29b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>27554_lla-mir-29b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>27602_sla-mir-29b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>27677_mml-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>27678_mml-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>28190_mne-mir-29b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>28276_ggo-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>28277_ggo-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>28388_hsa-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>28389_hsa-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>30063_ppa-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>30064_ppa-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>30173_ptr-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>30174_ptr-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>30778_ppy-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>30779_ppy-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>31448_oan-mir-29b-1:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 75 ctagcaccatttgaaatcagt 95
>31449_oan-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>31803_mmu-mir-29b-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 46 ctagcaccatttgaaatcagt 66
>31804_mmu-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>32684_rno-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>32685_rno-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>33086_rno-mir-3587:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 59 ctagcaccatttgaaatcagt 39
>33159_bta-mir-29b-1:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>33160_bta-mir-29b-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>33936_ssc-mir-29b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70
>34244_dre-mir-29b-1:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71
>34245_dre-mir-29b-2:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 55 ctagcaccatttgaaatcagt 75
>34246_dre-mir-29b-3:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 54 ctagcaccatttgaaatcagt 74
>34571_fru-mir-29b-1:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 49 ctagcaccatttgaaatcagt 69
>34572_fru-mir-29b-2:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 44 ctagcaccatttgaaatcagt 64
>34718_tni-mir-29b-1:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 49 ctagcaccatttgaaatcagt 69
>34719_tni-mir-29b-2:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 48 ctagcaccatttgaaatcagt 68
>34868_sko-mir-29b:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagt 80
|||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80
>38736_cte-mir-29b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 tagcaccatttgaaatcagt 80
||||||||||||||||||||
Sbjct: 61 tagcaccatttgaaatcagt 80
>35214_aae-mir-285:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 ctagcaccatttgaaatcagtact 83
||||||||||| ||||||||||||
Sbjct: 56 ctagcaccattcgaaatcagtact 79