miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37655_nvi-mir-210:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 tggaccccagtgcagctgctggccactgcacaagattagacataagactcttgtgcgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaccccagtgcagctgctggccactgcacaagattagacataagactcttgtgcgtgt 60
Query: 61 gacagcggctatggtggggcttcc 84
||||||||||||| ||||||||||
Sbjct: 61 gacagcggctatgatggggcttcc 84
>35374_ame-mir-210:mirbase
Length = 85
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 tggaccccagtgcagctgctggccactgcacaagattagacataagactcttgtgcgtgt 60
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaccctaatgcagctgctggccactgcacaagattagacataagactcttgtgcgtgt 60
Query: 61 gacagcggctatggtggggcttcca 85
||||||||||||| ||||| |||||
Sbjct: 61 gacagcggctatgatggggtttcca 85
>36111_dan-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>36189_der-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>36399_dme-mir-210:mirbase
Length = 100
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 72
Query: 71 at 72
||
Sbjct: 73 at 74
>36400_dme-mir-210:mirbase
Length = 100
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 72
Query: 71 at 72
||
Sbjct: 73 at 74
>37149_dse-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>37227_dsi-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>37442_dwi-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>37517_dya-mir-210:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagacttaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>36787_dmo-mir-210:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 71
Query: 71 at 72
||
Sbjct: 72 at 73
>36863_dpe-mir-210:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 tgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacagcggct 69
Query: 71 at 72
||
Sbjct: 70 at 71
>36940_dps-mir-210a:mirbase
Length = 94
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10 tgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacagcggct 69
Query: 71 at 72
||
Sbjct: 70 at 71
>36941_dps-mir-210b:mirbase
Length = 109
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Minus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 85 tgcagctgctggccactgcacaagattagatttaagactcttgtgcgtgtgacagcggct 26
Query: 71 at 72
||
Sbjct: 25 at 24
>37363_dvi-mir-210:mirbase
Length = 84
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10 tgcagctgctggccactgcacaagattagactcaagactcttgtgcgtgtgacagcggct 69
Query: 71 at 72
||
Sbjct: 70 at 71
>36278_dgr-mir-210:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 7e-20
Identities = 58/61 (95%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 14 agctgctggccactgcacaagattaga--cataagactcttgtgcgtgtgacagcggcta 71
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 13 agctgctggccactgcacaagattagattcaaaagactcttgtgcgtgtgacagcggcta 72
Query: 72 t 72
|
Sbjct: 73 t 73
>35199_aae-mir-210:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 4e-15
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 6 tgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacggct 64
Query: 71 at 72
||
Sbjct: 65 at 66
>35295_aga-mir-210:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 4e-15
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 10 tgcagctgctgaccactgcacaagattaga-atgcgactcttgtgcgtgtgacaacggct 68
Query: 71 at 72
||
Sbjct: 69 at 70
>35543_bmo-mir-210:mirbase
Length = 92
Score = 75.8 bits (38), Expect = 4e-15
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 12 gcagctgctggccactgcacaagattagaca---taagactcttgtgcgtgtgacagcgg 68
|||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 14 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 73
Query: 69 ctat 72
||||
Sbjct: 74 ctat 77
>36028_cqu-mir-210:mirbase
Length = 68
Score = 75.8 bits (38), Expect = 4e-15
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacataagactcttgtgcgtgtgacagcggct 70
||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 6 tgcagctgctgaccactgcacaagattaga-ttatgactcttgtgcgtgtgacaacggct 64
Query: 71 at 72
||
Sbjct: 65 at 66
>37564_lmi-mir-210:mirbase
Length = 62
Score = 71.9 bits (36), Expect = 7e-14
Identities = 56/62 (90%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 14 agctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcggct 70
||||||||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
Query: 71 at 72
||
Sbjct: 61 at 62
>37753_tca-mir-210:mirbase
Length = 76
Score = 65.9 bits (33), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 67
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 68 gctatggtggg 78
||||| |||||
Sbjct: 66 gctattgtggg 76
>37754_tca-mir-210:mirbase
Length = 76
Score = 65.9 bits (33), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 11 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 67
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
Query: 68 gctatggtggg 78
||||| |||||
Sbjct: 66 gctattgtggg 76
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggcta 71
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggcta 71
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggcta 71
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggcta 71
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggcta 71
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52 tgtgcgtgtgacagcggct 70
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>35068_api-mir-210-1:mirbase
Length = 41
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 ttgtgcgtgtgacagcggctatg 73
|||||||||||||| ||||||||
Sbjct: 1 ttgtgcgtgtgacatcggctatg 23
>35069_api-mir-210-2:mirbase
Length = 41
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 ttgtgcgtgtgacagcggctatg 73
|||||||||||||| ||||||||
Sbjct: 1 ttgtgcgtgtgacatcggctatg 23
