miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37660_nvi-mir-276:mirbase
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tggtagagatccagcagcgaggtatagagttcctacgtagatttcagaaagtaggaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtagagatccagcagcgaggtatagagttcctacgtagatttcagaaagtaggaactt 60
Query: 61 cataccgtgctcttggacttgccg 84
||||||||||||||||||||||||
Sbjct: 61 cataccgtgctcttggacttgccg 84
>37618_nlo-mir-276:mirbase
Length = 84
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 tggtagagatccagcagcgaggtatagagttcctacgtagatttcagaaagtaggaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtagagatccagcagcgaggtatagagttcctacgtagatttcagaaagtaggaactt 60
Query: 61 cataccgtgctcttggacttgccg 84
||||||||||||||| ||||||||
Sbjct: 61 cataccgtgctcttgcacttgccg 84
>35380_ame-mir-276:mirbase
Length = 84
Score = 151 bits (76), Expect = 9e-38
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1 tggtagagatccagcagcgaggtatagagttcctacgtagatttcagaaagtaggaactt 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tggtagagatccagcagcgaggtatagagttcctacgtagtgttcagaaagtaggaactt 60
Query: 61 cataccgtgctcttggacttgccg 84
||||||||||||||||||||||||
Sbjct: 61 cataccgtgctcttggacttgccg 84
>37448_dwi-mir-276a:mirbase
Length = 89
Score = 71.9 bits (36), Expect = 7e-14
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatttaataaactcgtaggaacttcataccgtgct 75
Query: 72 cttgga 77
||||||
Sbjct: 76 cttgga 81
>36869_dpe-mir-276a:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 58/66 (87%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| || | | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatattataaactcgtaggaacttcataccgtgct 75
Query: 72 cttgga 77
||||||
Sbjct: 76 cttgga 81
>36948_dps-mir-276a:mirbase
Length = 99
Score = 63.9 bits (32), Expect = 2e-11
Identities = 58/66 (87%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| || | | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatattataaactcgtaggaacttcataccgtgct 75
Query: 72 cttgga 77
||||||
Sbjct: 76 cttgga 81
>37767_tca-mir-276:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgtagatttcagaaagtaggaacttcataccgtgctcttg 75
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
Query: 76 ga 77
||
Sbjct: 70 ga 71
>37768_tca-mir-276:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgtagatttcagaaagtaggaacttcataccgtgctcttg 75
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
Query: 76 ga 77
||
Sbjct: 70 ga 71
>36195_der-mir-276a:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
Query: 72 cttgga 77
||||||
Sbjct: 74 cttgga 79
>36413_dme-mir-276a:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
Query: 72 cttgga 77
||||||
Sbjct: 74 cttgga 79
>36414_dme-mir-276a:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
Query: 72 cttgga 77
||||||
Sbjct: 74 cttgga 79
>37155_dse-mir-276a:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
Query: 72 cttgga 77
||||||
Sbjct: 74 cttgga 79
>37233_dsi-mir-276a:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
Query: 72 cttgga 77
||||||
Sbjct: 74 cttgga 79
>37524_dya-mir-276a:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 5/66 (7%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcatt--ataaactcgtaggaacttcataccgtgct 73
Query: 72 cttgga 77
||||||
Sbjct: 74 cttgga 79
>36117_dan-mir-276a:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| | | | ||| |||||||||||||||||||||
Sbjct: 15 cagcgaggtatagagttcctacgttaacattataaactcgtaggaacttcataccgtgct 74
Query: 72 cttgga 77
||||||
Sbjct: 75 cttgga 80
>36792_dmo-mir-276a:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| | || | | | |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcaatttaaatactcgtaggaacttcataccgtgct 75
Query: 72 cttgga 77
||||||
Sbjct: 76 cttgga 81
>37369_dvi-mir-276a:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgtagatttcagaaa---gtaggaacttcataccgtgct 71
|||||||||||||||||||||||| | || | | | |||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgttcaatttatatactcgtaggaacttcataccgtgct 75
Query: 72 cttgga 77
||||||
Sbjct: 76 cttgga 81
>35076_api-mir-276:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||||||||||||||||||||
Sbjct: 51 gtaggaacttcataccgtgctcttgga 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgt 38
|||||||||||||||||||||||
Sbjct: 8 agcgaggtatagagttcctacgt 30
>35300_aga-mir-276:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||||||||||||||||||||
Sbjct: 54 gtaggaacttcataccgtgctcttgga 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacg 37
|||||||||||||||||||||||
Sbjct: 13 cagcgaggtatagagttcctacg 35
>35301_aga-mir-276:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||||||||||||||||||||
Sbjct: 54 gtaggaacttcataccgtgctcttgga 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacg 37
|||||||||||||||||||||||
Sbjct: 13 cagcgaggtatagagttcctacg 35
>35205_aae-mir-276-1:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgg 76
||||||||||||||||||||||||||
Sbjct: 56 gtaggaacttcataccgtgctcttgg 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgt 39
>35206_aae-mir-276-2:mirbase
Length = 190
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 taggaacttcataccgtgctcttgga 77
||||||||||||||||||||||||||
Sbjct: 106 taggaacttcataccgtgctcttgga 131
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttccta 35
|||||||||||||||||||||
Sbjct: 63 cagcgaggtatagagttccta 83
>35549_bmo-mir-276:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgg 76
||||||||||||||||||||||||||
Sbjct: 50 gtaggaacttcataccgtgctcttgg 75
>36032_cqu-mir-276-1:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 taggaacttcataccgtgctcttgga 77
||||||||||||||||||||||||||
Sbjct: 66 taggaacttcataccgtgctcttgga 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttccta 35
||||||||||||||||||||
Sbjct: 22 agcgaggtatagagttccta 41
>36033_cqu-mir-276-2:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgg 76
||||||||||||||||||||||||||
Sbjct: 62 gtaggaacttcataccgtgctcttgg 87
>36034_cqu-mir-276-3:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 taggaacttcataccgtgctcttgga 77
||||||||||||||||||||||||||
Sbjct: 66 taggaacttcataccgtgctcttgga 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttccta 35
||||||||||||||||||||
Sbjct: 22 agcgaggtatagagttccta 41
>36284_dgr-mir-276a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 taggaacttcataccgtgctcttgga 77
||||||||||||||||||||||||||
Sbjct: 56 taggaacttcataccgtgctcttgga 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 16 cagcgaggtatagagttcctacgt 39
>37565_lmi-mir-276:mirbase
Length = 58
Score = 52.0 bits (26), Expect = 6e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgtagatttcagaaagtaggaacttcataccgtgctct 73
||||||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct: 2 agcgaggtatagagttcctacgt-gtgttgttatagtaggaacttcataccgtgctct 58
>37370_dvi-mir-276b:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 58/67 (86%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt--agatttcagaaa--gtaggaacttcataccgtgc 70
|||||||||||||||||||||||| | ||| || || |||||||||| |||||||||
Sbjct: 20 cagcgaggtatagagttcctacgtgcaaattgcaataatcgtaggaacttaataccgtgc 79
Query: 71 tcttgga 77
|||||||
Sbjct: 80 tcttgga 86
>36118_dan-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 20 cagcgaggtatagagttcctacgt 43
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36196_der-mir-276b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 20 cagcgaggtatagagttcctacgt 43
>36285_dgr-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 57/66 (86%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgt--agatttcagaaa--gtaggaacttcataccgtgct 71
||||||||||||||||||||||| | ||| || || |||||||||| ||||||||||
Sbjct: 21 agcgaggtatagagttcctacgtgcaaattgcaataatcgtaggaacttaataccgtgct 80
Query: 72 cttgga 77
||||||
Sbjct: 81 cttgga 86
>36415_dme-mir-276b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 23 cagcgaggtatagagttcctacgt 46
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||| ||||||||||||||||
Sbjct: 61 gtaggaacttaataccgtgctcttgga 87
>36416_dme-mir-276b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 23 cagcgaggtatagagttcctacgt 46
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||| ||||||||||||||||
Sbjct: 61 gtaggaacttaataccgtgctcttgga 87
>36793_dmo-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 20 cagcgaggtatagagttcctacgt 43
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36870_dpe-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 21 cagcgaggtatagagttcctacgt 44
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36949_dps-mir-276b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 22 cagcgaggtatagagttcctacgt 45
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctcttgga 77
|||||||||| ||||||||||||||||
Sbjct: 61 gtaggaacttaataccgtgctcttgga 87
>37156_dse-mir-276b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 20 cagcgaggtatagagttcctacgt 43
>37234_dsi-mir-276b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 20 cagcgaggtatagagttcctacgt 43
>37449_dwi-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 57/66 (86%), Gaps = 4/66 (6%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgt--agatttcagaaa--gtaggaacttcataccgtgct 71
||||||||||||||||||||||| | ||| || || |||||||||| ||||||||||
Sbjct: 21 agcgaggtatagagttcctacgtgcaaattgcaataatcgtaggaacttaataccgtgct 80
Query: 72 cttgga 77
||||||
Sbjct: 81 cttgga 86
>37525_dya-mir-276b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 cagcgaggtatagagttcctacgt 38
||||||||||||||||||||||||
Sbjct: 20 cagcgaggtatagagttcctacgt 43
>35022_dpu-mir-276:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 agcgaggtatagagttcctacgt 38
|||||||||||||||||||||||
Sbjct: 12 agcgaggtatagagttcctacgt 34
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtaggaacttcataccgtgctct 73
|||||||||||||||||||||||
Sbjct: 60 gtaggaacttcataccgtgctct 82
