miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37681_tca-bantam:mirbase
Length = 81
Score = 131 bits (66), Expect = 9e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 5 agacgaaactggttttcacaatgatttgacagatgtatttgattctgagatcattgtgaa 64
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 agacgaaactggttttcacagtgatttgacagatatatttgattctgagatcattgtgaa 66
Query: 65 agctgattttgttc 78
||||||||||||||
Sbjct: 67 agctgattttgttc 80
>37682_tca-bantam:mirbase
Length = 81
Score = 131 bits (66), Expect = 9e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 5 agacgaaactggttttcacaatgatttgacagatgtatttgattctgagatcattgtgaa 64
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 agacgaaactggttttcacagtgatttgacagatatatttgattctgagatcattgtgaa 66
Query: 65 agctgattttgttc 78
||||||||||||||
Sbjct: 67 agctgattttgttc 80
>35336_ame-bantam:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 7 acgaaactggttttcacaatgatttgacagatgtatttgattctgagatcattgtgaaag 66
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 7 acgaaactggttttcacaatgatttgacagatagattcgattctgagatcattgtgaaag 66
Query: 67 ctgattttgtt 77
|||||||||||
Sbjct: 67 ctgattttgtt 77
>35510_bmo-bantam:mirbase
Length = 90
Score = 91.7 bits (46), Expect = 8e-20
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 7 acgaaactggttttcacaatgatttgacagatgtatttg-attctgagatcattgtgaaa 65
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 12 acgaaactggttttcataatgatttgacagattgttttgtattctgagatcattgtgaaa 71
Query: 66 gctgattttgttcc 79
||| ||||||||||
Sbjct: 72 gctaattttgttcc 85
>34957_isc-bantam:mirbase
Length = 101
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tctgagatcattgtgaaagctgattttgtt 77
||||||||||||||||||||||||||||||
Sbjct: 59 tctgagatcattgtgaaagctgattttgtt 88
>34994_dpu-bantam:mirbase
Length = 101
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 47 ttctgagatcattgtgaaagctgattttgt 76
||||||||||||||||||||||||||||||
Sbjct: 58 ttctgagatcattgtgaaagctgattttgt 87
>35040_api-bantam:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 attctgagatcattgtgaaagctgattt 73
||||||||||||||||||||||| ||||
Sbjct: 44 attctgagatcattgtgaaagctaattt 71
>36073_dan-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36150_der-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36232_dgr-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36315_dme-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36316_dme-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36749_dmo-bantam:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 53 tgagatcattttgaaagctgattttgt 79
>36821_dpe-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>36897_dps-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37109_dse-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37188_dsi-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37325_dvi-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37400_dwi-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>37478_dya-bantam:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78
>38091_bma-bantam:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tttgattctgagatcattgtgaaagct 68
||||| |||||||||||||||||||||
Sbjct: 46 tttgagtctgagatcattgtgaaagct 72
>35163_aae-bantam:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgatttt 74
|||||||||| ||||||||||||||
Sbjct: 47 tgagatcattttgaaagctgatttt 71
>35164_aae-bantam:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgatttt 74
|||||||||| ||||||||||||||
Sbjct: 47 tgagatcattttgaaagctgatttt 71
>36001_cqu-bantam:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgatttt 74
|||||||||| ||||||||||||||
Sbjct: 46 tgagatcattttgaaagctgatttt 70
>38717_cte-bantam:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 46 attctgagatcattgtgaaa 65
||||||||||||||||||||
Sbjct: 57 attctgagatcattgtgaaa 76
>35268_aga-bantam:mirbase
Length = 111
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 50 tgagatcattgtgaaagctgattttgt 76
|||||||| | ||||||||||||||||
Sbjct: 70 tgagatcactttgaaagctgattttgt 96
