miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37572_ngi-mir-13a:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                       
Query: 17  cttttgcggtccgatacatcaaattggttgtggaatgtctcgtctttccatatcacagcc 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cttttgcggtccgatacatcaaattggttgtggaatgtctcgtctttccatatcacagcc 60

                                    
Query: 77  attttgatgagcttggcccgtagaa 101
           |||||||||||||||||||||||||
Sbjct: 61  attttgatgagcttggcccgtagaa 85




>37606_nlo-mir-13a:mirbase
          Length = 85

 Score =  161 bits (81), Expect = 1e-40
 Identities = 84/85 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  cttttgcggtccgatacatcaaattggttgtggaatgtctcgtctttccatatcacagcc 76
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1   cttttgcggtccgatacatcaaattggttgtggaatgtttcgtctttccatatcacagcc 60

                                    
Query: 77  attttgatgagcttggcccgtagaa 101
           |||||||||||||||||||||||||
Sbjct: 61  attttgatgagcttggcccgtagaa 85




>35352_ame-mir-13a:mirbase
          Length = 100

 Score =  109 bits (55), Expect = 4e-25
 Identities = 78/85 (91%), Gaps = 3/85 (3%)
 Strand = Plus / Plus

                                                                       
Query: 17  cttttgcggtccgatacatcaaattggttgtggaatgtctcgtctttccatatcacagcc 76
           |||||||||||||||||||||||||||||||||||||| |||  |   ||||||||||||
Sbjct: 17  cttttgcggtccgatacatcaaattggttgtggaatgtttcgagt---catatcacagcc 73

                                    
Query: 77  attttgatgagcttggcccgtagaa 101
           |||||||||||||||||||| ||||
Sbjct: 74  attttgatgagcttggcccgcagaa 98




>36094_dan-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 45 catatcacagccattttgatgag 67




>36172_der-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 46 catatcacagccattttgatgag 68




>36260_dgr-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 45 catatcacagccattttgatgag 67




>36359_dme-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 46 catatcacagccattttgatgag 68




>36360_dme-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 46 catatcacagccattttgatgag 68




>36770_dmo-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 45 catatcacagccattttgatgag 67




>36843_dpe-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 45 catatcacagccattttgatgag 67




>36919_dps-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 45 catatcacagccattttgatgag 67




>37132_dse-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 46 catatcacagccattttgatgag 68




>37208_dsi-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 46 catatcacagccattttgatgag 68




>37346_dvi-mir-13a:mirbase
          Length = 74

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 45 catatcacagccattttgatgag 67




>37423_dwi-mir-13a:mirbase
          Length = 78

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71




>37500_dya-mir-13a:mirbase
          Length = 75

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 catatcacagccattttgatgag 87
          |||||||||||||||||||||||
Sbjct: 46 catatcacagccattttgatgag 68




>37711_tca-mir-13a:mirbase
          Length = 80

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 66 atatcacagccattttgatgagcttgg 92
          |||||||||||| ||||||||||||||
Sbjct: 47 atatcacagccactttgatgagcttgg 73




>37712_tca-mir-13a:mirbase
          Length = 80

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 66 atatcacagccattttgatgagcttgg 92
          |||||||||||| ||||||||||||||
Sbjct: 47 atatcacagccactttgatgagcttgg 73




>35051_api-mir-13a:mirbase
          Length = 61

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 65 catatcacagccattttgatgagc 88
          ||||||||||||| ||||||||||
Sbjct: 38 catatcacagccactttgatgagc 61




>36095_dan-mir-13b-1:mirbase
          Length = 69

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 42 catatcacagccattttgacgagtttgg 69




>36173_der-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>36261_dgr-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>36361_dme-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>36362_dme-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>36771_dmo-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>36844_dpe-mir-13b-1:mirbase
          Length = 69

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 42 catatcacagccattttgacgagtttgg 69




>36920_dps-mir-13b-1:mirbase
          Length = 69

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 42 catatcacagccattttgacgagtttgg 69




>37133_dse-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>37209_dsi-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>37347_dvi-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68




>37424_dwi-mir-13b-1:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 44 catatcacagccattttgacgagtttgg 71




>37501_dya-mir-13b-1:mirbase
          Length = 68

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 65 catatcacagccattttgatgagcttgg 92
          ||||||||||||||||||| ||| ||||
Sbjct: 41 catatcacagccattttgacgagtttgg 68