miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37574_ngi-mir-29b:mirbase
          Length = 94

 Score =  186 bits (94), Expect = 2e-48
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                      
Query: 6  aagaattaagatagcagaggtactgacttcggtgcgtgctggggttaccgatcaagcgcc 65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagaattaagatagcagaggtactgacttcggtgcgtgctggggttaccgatcaagcgcc 60

                                            
Query: 66 tagcaccatttgaaatcagtactactcgtcttag 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 61 tagcaccatttgaaatcagtactactcgtcttag 94




>35355_ame-mir-29b:mirbase
          Length = 100

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                       
Query: 21  agaggtactgacttcggtgcgtgctggggttaccgatcaagcgcctagcaccatttgaaa 80
           |||||||||||||||  ||||||||||||||   | | || | |||||||||||||||||
Sbjct: 22  agaggtactgacttctatgcgtgctggggtttgtgctaaatctcctagcaccatttgaaa 81

                              
Query: 81  tcagtactactcgtcttag 99
           |||||||||||| ||||||
Sbjct: 82  tcagtactactcttcttag 100




>38855_lgi-mir-29:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80




>38735_cte-mir-29a:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80




>24655_bfl-mir-29b:mirbase
          Length = 95

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 61 ctagcaccatttgaaatcagt 81




>25451_pma-mir-29a:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 49 ctagcaccatttgaaatcagt 69




>25453_pma-mir-29c:mirbase
          Length = 92

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 54 ctagcaccatttgaaatcagt 74




>25728_xtr-mir-29b:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>25912_gga-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>25913_gga-mir-29b-2:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>26419_tgu-mir-29b-1:mirbase
          Length = 71

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 40 ctagcaccatttgaaatcagt 60




>26420_tgu-mir-29b-2:mirbase
          Length = 71

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 40 ctagcaccatttgaaatcagt 60




>26649_cfa-mir-29b-1:mirbase
          Length = 65

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 42 ctagcaccatttgaaatcagt 62




>26650_cfa-mir-29b-2:mirbase
          Length = 66

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 43 ctagcaccatttgaaatcagt 63




>26971_eca-mir-29b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>26972_eca-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>27355_mdo-mir-29b:mirbase
          Length = 86

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 54 ctagcaccatttgaaatcagt 74




>27494_age-mir-29b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>27554_lla-mir-29b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>27602_sla-mir-29b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>27677_mml-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>27678_mml-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>28190_mne-mir-29b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>28276_ggo-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>28277_ggo-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>28388_hsa-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>28389_hsa-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>30063_ppa-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>30064_ppa-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>30173_ptr-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>30174_ptr-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>30778_ppy-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>30779_ppy-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>31448_oan-mir-29b-1:mirbase
          Length = 121

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 75 ctagcaccatttgaaatcagt 95




>31449_oan-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>31803_mmu-mir-29b-1:mirbase
          Length = 71

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 46 ctagcaccatttgaaatcagt 66




>31804_mmu-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>32684_rno-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>32685_rno-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>33086_rno-mir-3587:mirbase
          Length = 63

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 59 ctagcaccatttgaaatcagt 39




>33159_bta-mir-29b-1:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>33160_bta-mir-29b-2:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>33936_ssc-mir-29b:mirbase
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 50 ctagcaccatttgaaatcagt 70




>34244_dre-mir-29b-1:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 51 ctagcaccatttgaaatcagt 71




>34245_dre-mir-29b-2:mirbase
          Length = 90

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 55 ctagcaccatttgaaatcagt 75




>34246_dre-mir-29b-3:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 54 ctagcaccatttgaaatcagt 74




>34571_fru-mir-29b-1:mirbase
          Length = 77

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 49 ctagcaccatttgaaatcagt 69




>34572_fru-mir-29b-2:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 44 ctagcaccatttgaaatcagt 64




>34718_tni-mir-29b-1:mirbase
          Length = 79

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 49 ctagcaccatttgaaatcagt 69




>34719_tni-mir-29b-2:mirbase
          Length = 78

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 48 ctagcaccatttgaaatcagt 68




>34868_sko-mir-29b:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ctagcaccatttgaaatcagt 85
          |||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80




>38736_cte-mir-29b:mirbase
          Length = 96

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 66 tagcaccatttgaaatcagt 85
          ||||||||||||||||||||
Sbjct: 61 tagcaccatttgaaatcagt 80




>35214_aae-mir-285:mirbase
          Length = 104

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 65 ctagcaccatttgaaatcagtact 88
          ||||||||||| ||||||||||||
Sbjct: 56 ctagcaccattcgaaatcagtact 79