miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37576_ngi-mir-34:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 14 ggcgtgttggcagtgtggttagctggttgtgtagcttatagaaagcacgaccgctatcga 73
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ggcgtgttggcagtgtggttagctggttgtgtagattatagaaagcacgaccgctatcgg 60
Query: 74 cactgcaattatgacggtcg 93
||||||||||||||||||||
Sbjct: 61 cactgcaattatgacggtcg 80
>37608_nlo-mir-34:mirbase
Length = 80
Score = 143 bits (72), Expect = 3e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 14 ggcgtgttggcagtgtggttagctggttgtgtagcttatagaaagcacgaccgctatcga 73
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ggcgtgttggcagtgtggttagctggttgtgtagattatagaaagcacgaccgctatcgg 60
Query: 74 cactgcaattatgacggtcg 93
||||||||||||||||||||
Sbjct: 61 cactgcaattatgacggtcg 80
>36101_dan-mir-34:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagct 49
||||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagct 42
>35358_ame-mir-34:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 18 tgttggcagtgtggttagctggttgtgtagctt-atagaaagcacgaccgctatcgacac 76
|||||||||||| ||||||||||||||| ||| || | | ||||||||||||| |||
Sbjct: 18 tgttggcagtgttgttagctggttgtgtggctacattgtatatacgaccgctatcggcac 77
Query: 77 tgcaattatgacg 89
|||||||||||||
Sbjct: 78 tgcaattatgacg 90
>36179_der-mir-34:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41
>36373_dme-mir-34:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 16 ttggcagtgtggttagctggttgtgtagc 44
>36374_dme-mir-34:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 16 ttggcagtgtggttagctggttgtgtagc 44
>36850_dpe-mir-34:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41
>36926_dps-mir-34:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 16 ttggcagtgtggttagctggttgtgtagc 44
>37139_dse-mir-34:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41
>37215_dsi-mir-34:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41
>37430_dwi-mir-34:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41
>37507_dya-mir-34:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
|||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41
>35531_bmo-mir-34:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 19 gttggcagtgtggttagctggttgtgta 46
||||||||||||||||||||||||||||
Sbjct: 19 gttggcagtgtggttagctggttgtgta 46
>35184_aae-mir-34:mirbase
Length = 129
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgtgtag 47
|||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgtag 42
>35005_dpu-mir-34:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 gttggcagtgtggttagctggttgtg 44
||||||||||||||||||||||||||
Sbjct: 20 gttggcagtgtggttagctggttgtg 45
>36267_dgr-mir-34:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgt 45
||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgt 38
>36777_dmo-mir-34:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgt 45
||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgt 38
>37353_dvi-mir-34:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ttggcagtgtggttagctggttgtgt 45
||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgt 38
>35283_aga-mir-34:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgtgt 45
|||||||||||||||||||||||||
Sbjct: 17 tggcagtgtggttagctggttgtgt 41
>37723_tca-mir-34:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgtgt 45
|||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35
>37724_tca-mir-34:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgtgt 45
|||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35
>38739_cte-mir-34:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgtg 44
||||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgtg 45
>34870_sko-mir-34:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgt 43
|||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgt 44
>38100_bma-mir-34:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgt 43
|||||||||||||||||||||||
Sbjct: 23 tggcagtgtggttagctggttgt 45
>35054_api-mir-34:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggttgtgta 46
|||||||||| |||||||||||||||
Sbjct: 1 tggcagtgtgattagctggttgtgta 26
>38488_crm-mir-34:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 ggcagtgtggttagctggttg 42
|||||||||||||||||||||
Sbjct: 16 ggcagtgtggttagctggttg 36
>38127_cbr-mir-34:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 ggcagtgtggttagctggttg 42
|||||||||||||||||||||
Sbjct: 19 ggcagtgtggttagctggttg 39
>38268_cel-mir-34:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 ggcagtgtggttagctggttg 42
|||||||||||||||||||||
Sbjct: 17 ggcagtgtggttagctggttg 37
>38858_lgi-mir-34:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tggcagtgtggttagctggt 40
||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggt 41