miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37576_ngi-mir-34:mirbase
          Length = 80

 Score =  143 bits (72), Expect = 3e-35
 Identities = 78/80 (97%)
 Strand = Plus / Plus

                                                                      
Query: 14 ggcgtgttggcagtgtggttagctggttgtgtagcttatagaaagcacgaccgctatcga 73
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 1  ggcgtgttggcagtgtggttagctggttgtgtagattatagaaagcacgaccgctatcgg 60

                              
Query: 74 cactgcaattatgacggtcg 93
          ||||||||||||||||||||
Sbjct: 61 cactgcaattatgacggtcg 80




>37608_nlo-mir-34:mirbase
          Length = 80

 Score =  143 bits (72), Expect = 3e-35
 Identities = 78/80 (97%)
 Strand = Plus / Plus

                                                                      
Query: 14 ggcgtgttggcagtgtggttagctggttgtgtagcttatagaaagcacgaccgctatcga 73
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 1  ggcgtgttggcagtgtggttagctggttgtgtagattatagaaagcacgaccgctatcgg 60

                              
Query: 74 cactgcaattatgacggtcg 93
          ||||||||||||||||||||
Sbjct: 61 cactgcaattatgacggtcg 80




>36101_dan-mir-34:mirbase
          Length = 97

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 20 ttggcagtgtggttagctggttgtgtagct 49
          ||||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagct 42




>35358_ame-mir-34:mirbase
          Length = 100

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 63/73 (86%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 18 tgttggcagtgtggttagctggttgtgtagctt-atagaaagcacgaccgctatcgacac 76
          |||||||||||| ||||||||||||||| |||  || | |   ||||||||||||| |||
Sbjct: 18 tgttggcagtgttgttagctggttgtgtggctacattgtatatacgaccgctatcggcac 77

                       
Query: 77 tgcaattatgacg 89
          |||||||||||||
Sbjct: 78 tgcaattatgacg 90




>36179_der-mir-34:mirbase
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41




>36373_dme-mir-34:mirbase
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 16 ttggcagtgtggttagctggttgtgtagc 44




>36374_dme-mir-34:mirbase
          Length = 99

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 16 ttggcagtgtggttagctggttgtgtagc 44




>36850_dpe-mir-34:mirbase
          Length = 97

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41




>36926_dps-mir-34:mirbase
          Length = 100

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 16 ttggcagtgtggttagctggttgtgtagc 44




>37139_dse-mir-34:mirbase
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41




>37215_dsi-mir-34:mirbase
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41




>37430_dwi-mir-34:mirbase
          Length = 100

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41




>37507_dya-mir-34:mirbase
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 20 ttggcagtgtggttagctggttgtgtagc 48
          |||||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgtagc 41




>35531_bmo-mir-34:mirbase
          Length = 98

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 19 gttggcagtgtggttagctggttgtgta 46
          ||||||||||||||||||||||||||||
Sbjct: 19 gttggcagtgtggttagctggttgtgta 46




>35184_aae-mir-34:mirbase
          Length = 129

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 21 tggcagtgtggttagctggttgtgtag 47
          |||||||||||||||||||||||||||
Sbjct: 16 tggcagtgtggttagctggttgtgtag 42




>35005_dpu-mir-34:mirbase
          Length = 101

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 19 gttggcagtgtggttagctggttgtg 44
          ||||||||||||||||||||||||||
Sbjct: 20 gttggcagtgtggttagctggttgtg 45




>36267_dgr-mir-34:mirbase
          Length = 87

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 ttggcagtgtggttagctggttgtgt 45
          ||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgt 38




>36777_dmo-mir-34:mirbase
          Length = 87

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 ttggcagtgtggttagctggttgtgt 45
          ||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgt 38




>37353_dvi-mir-34:mirbase
          Length = 87

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 ttggcagtgtggttagctggttgtgt 45
          ||||||||||||||||||||||||||
Sbjct: 13 ttggcagtgtggttagctggttgtgt 38




>35283_aga-mir-34:mirbase
          Length = 90

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 tggcagtgtggttagctggttgtgt 45
          |||||||||||||||||||||||||
Sbjct: 17 tggcagtgtggttagctggttgtgt 41




>37723_tca-mir-34:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 tggcagtgtggttagctggttgtgt 45
          |||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35




>37724_tca-mir-34:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 tggcagtgtggttagctggttgtgt 45
          |||||||||||||||||||||||||
Sbjct: 11 tggcagtgtggttagctggttgtgt 35




>38739_cte-mir-34:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 tggcagtgtggttagctggttgtg 44
          ||||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgtg 45




>34870_sko-mir-34:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tggcagtgtggttagctggttgt 43
          |||||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggttgt 44




>38100_bma-mir-34:mirbase
          Length = 111

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tggcagtgtggttagctggttgt 43
          |||||||||||||||||||||||
Sbjct: 23 tggcagtgtggttagctggttgt 45




>35054_api-mir-34:mirbase
          Length = 68

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 21 tggcagtgtggttagctggttgtgta 46
          |||||||||| |||||||||||||||
Sbjct: 1  tggcagtgtgattagctggttgtgta 26




>38488_crm-mir-34:mirbase
          Length = 88

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ggcagtgtggttagctggttg 42
          |||||||||||||||||||||
Sbjct: 16 ggcagtgtggttagctggttg 36




>38127_cbr-mir-34:mirbase
          Length = 93

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ggcagtgtggttagctggttg 42
          |||||||||||||||||||||
Sbjct: 19 ggcagtgtggttagctggttg 39




>38268_cel-mir-34:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ggcagtgtggttagctggttg 42
          |||||||||||||||||||||
Sbjct: 17 ggcagtgtggttagctggttg 37




>38858_lgi-mir-34:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggcagtgtggttagctggt 40
          ||||||||||||||||||||
Sbjct: 22 tggcagtgtggttagctggt 41