miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35366_ame-mir-100:mirbase
Length = 100
Score = 165 bits (83), Expect = 7e-42
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 5 tacttgatgacactaacccgtagatccgaacttgtgggcttttttatatgcataccgcaa 64
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 tacttgatgatactaacccgtagatccgaacttgtgggcttttttatatgtataccgcaa 64
Query: 65 gctcctatctaccggtacatgtagtcaggcc 95
|||||||||||||||||||||||||||||||
Sbjct: 65 gctcctatctaccggtacatgtagtcaggcc 95
>37578_ngi-mir-100:mirbase
Length = 84
Score = 89.7 bits (45), Expect = 4e-19
Identities = 80/87 (91%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 9 tgatgacactaacccgtagatccgaacttgtgggcttttttatatgcataccgcaagctc 68
||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 4 tgatgacacta-cccgtagatccgac--tgtgggctttt--atatgcatac-gcaagctc 57
Query: 69 ctatctaccggtacatgtagtcaggcc 95
|||||||||||||||||||||||||||
Sbjct: 58 ctatctaccggtacatgtagtcaggcc 84
>34263_dre-mir-100-1:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 tgacactaacccgtagatccgaacttgtgg 41
|||||| |||||||||||||||||||||||
Sbjct: 17 tgacacaaacccgtagatccgaacttgtgg 46
>34970_isc-mir-100:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ctaacccgtagatccgaacttgtg 40
||||||||||||||||||||||||
Sbjct: 19 ctaacccgtagatccgaacttgtg 42
>37737_tca-mir-100:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtggg 42
||||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtggg 33
>37738_tca-mir-100:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtggg 42
||||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtggg 33
>25468_pma-mir-100a:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 17 aacccgtagatccgaacttgtgg 39
>25470_pma-mir-100c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 70 aacccgtagatccgaacttgtgg 48
>25930_gga-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>26997_eca-mir-100:mirbase
Length = 55
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgaacttgtgg 23
>27364_mdo-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>27501_age-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>27563_lla-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>27610_sla-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>27704_mml-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>28293_ggo-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>28414_hsa-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>30080_ppa-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>30198_ptr-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>30803_ppy-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>31471_oan-mir-100:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 14 aacccgtagatccgaacttgtgg 36
>33187_bta-mir-100:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtgg 35
>34264_dre-mir-100-2:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 11 aacccgtagatccgaacttgtgg 33
>34579_fru-mir-100:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 5 aacccgtagatccgaacttgtgg 27
>34726_tni-mir-100:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtgg 41
|||||||||||||||||||||||
Sbjct: 5 aacccgtagatccgaacttgtgg 27
>39244_nve-mir-100:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 acccgtagatccgaacttgtgg 41
||||||||||||||||||||||
Sbjct: 17 acccgtagatccgaacttgtgg 38
>38866_lgi-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>24672_bfl-mir-100:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>25755_xtr-mir-100:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtg 31
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 11 aacccgtagatccgaacttgtg 32
>26441_tgu-mir-100-2:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 11 aacccgtagatccgaacttgtg 32
>31827_mmu-mir-100:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtg 34
>32708_rno-mir-100:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 13 aacccgtagatccgaacttgtg 34
>33958_ssc-mir-100:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 16 aacccgtagatccgaacttgtg 37
>34877_sko-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35010_dpu-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35190_aae-mir-100:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 31 aacccgtagatccgaacttgtg 52
>35288_aga-mir-100:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 15 aacccgtagatccgaacttgtg 36
>35537_bmo-mir-100:mirbase
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>36020_cqu-mir-100:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 23 aacccgtagatccgaacttgtg 44
>38112_bma-mir-100b:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aacccgtagatccgaacttgtg 40
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35062_api-mir-100:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 acccgtagatccgaacttgtg 40
|||||||||||||||||||||
Sbjct: 22 acccgtagatccgaacttgtg 42
