miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35372_ame-mir-190:mirbase
Length = 100
Score = 61.9 bits (31), Expect = 8e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtataataa--taacgaccaggaatcaaacatattat 81
||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||
Sbjct: 25 agatatgtttgatattcttggttgttttttaaagaatcgaccaggaatcaaacatattat 84
Query: 82 ta 83
||
Sbjct: 85 ta 86
>37225_dsi-mir-190:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtat 50
|||||||||||||||||||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtat 40
>37749_tca-mir-190:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtat 50
|||||||||||||||||||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtat 40
>37750_tca-mir-190:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgtat 50
|||||||||||||||||||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtat 40
>35067_api-mir-190:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 7 agatatgtttgatattcttggttgt 31
>35197_aae-mir-190:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 58 ccaggaatcaaacatattattac 80
>35294_aga-mir-190:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 67 ccaggaatcaaacatattattac 89
>35542_bmo-mir-190:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 17 agatatgtttgatattcttggttgt 41
>36026_cqu-mir-190-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 58 ccaggaatcaaacatattattac 80
>36027_cqu-mir-190-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 58 ccaggaatcaaacatattattac 80
>36395_dme-mir-190:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 66 ccaggaatcaaacatattattac 88
>36396_dme-mir-190:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 66 ccaggaatcaaacatattattac 88
>36938_dps-mir-190:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 agatatgtttgatattcttggttgt 48
|||||||||||||||||||||||||
Sbjct: 17 agatatgtttgatattcttggttgt 41
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ccaggaatcaaacatattattac 84
|||||||||||||||||||||||
Sbjct: 59 ccaggaatcaaacatattattac 81
