miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37588_ngi-mir-277:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60

                                   
Query: 61 actatctggtacgacatctctcctg 85
          |||||||||||||||||||||||||
Sbjct: 61 actatctggtacgacatctctcctg 85




>37619_nlo-mir-277:mirbase
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60

                                   
Query: 61 actatctggtacgacatctctcctg 85
          |||||||||||||||||||||||||
Sbjct: 61 actatctggtacgacatctctcctg 85




>35381_ame-mir-277:mirbase
          Length = 84

 Score =  125 bits (63), Expect = 5e-30
 Identities = 75/78 (96%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                      
Query: 8  tggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgcactatct 67
          |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct: 7  tggggctcgtgccagatgcgcgtttacacggg--ccctgaatactgtaaatgcactatct 64

                            
Query: 68 ggtacgacatctctcctg 85
          ||||||||||||||||||
Sbjct: 65 ggtacgacatctctcctg 82




>35550_bmo-mir-277:mirbase
          Length = 122

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 50  actgtaaatgcactatctggtacgacatc 78
           |||||||||||||||||||||||||||||
Sbjct: 77  actgtaaatgcactatctggtacgacatc 105




>37769_tca-mir-277:mirbase
          Length = 81

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 46 gaatactgtaaatgcactatctggtacgaca 76
          |||| ||||||||||||||||||||||||||
Sbjct: 45 gaattctgtaaatgcactatctggtacgaca 75



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 cgtgccagatgcgcgtttacac 36
          ||||||||||||||||||||||
Sbjct: 9  cgtgccagatgcgcgtttacac 30




>37770_tca-mir-277:mirbase
          Length = 81

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 46 gaatactgtaaatgcactatctggtacgaca 76
          |||| ||||||||||||||||||||||||||
Sbjct: 45 gaattctgtaaatgcactatctggtacgaca 75



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 cgtgccagatgcgcgtttacac 36
          ||||||||||||||||||||||
Sbjct: 9  cgtgccagatgcgcgtttacac 30




>35207_aae-mir-277:mirbase
          Length = 95

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 60 tgtaaatgcactatctggtacgacat 85




>35302_aga-mir-277:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>36035_cqu-mir-277:mirbase
          Length = 96

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 61 tgtaaatgcactatctggtacgacat 86




>36119_dan-mir-277:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>36197_der-mir-277:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>36286_dgr-mir-277:mirbase
          Length = 89

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 54 tgtaaatgcactatctggtacgacat 79




>36417_dme-mir-277:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>36418_dme-mir-277:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>36794_dmo-mir-277:mirbase
          Length = 88

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 53 tgtaaatgcactatctggtacgacat 78




>36871_dpe-mir-277:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>36951_dps-mir-277:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>37157_dse-mir-277:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>37371_dvi-mir-277:mirbase
          Length = 89

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 54 tgtaaatgcactatctggtacgacat 79




>37450_dwi-mir-277:mirbase
          Length = 99

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 58 tgtaaatgcactatctggtacgacat 83




>37526_dya-mir-277:mirbase
          Length = 98

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tgtaaatgcactatctggtacgacat 77
          ||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82




>35077_api-mir-277:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 tgtaaatgcactatctggtacgaca 76
          |||||||||||||||||||||||||
Sbjct: 55 tgtaaatgcactatctggtacgaca 79