miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37588_ngi-mir-277:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60
Query: 61 actatctggtacgacatctctcctg 85
|||||||||||||||||||||||||
Sbjct: 61 actatctggtacgacatctctcctg 85
>37619_nlo-mir-277:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcaggctggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgc 60
Query: 61 actatctggtacgacatctctcctg 85
|||||||||||||||||||||||||
Sbjct: 61 actatctggtacgacatctctcctg 85
>35381_ame-mir-277:mirbase
Length = 84
Score = 125 bits (63), Expect = 5e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 8 tggggctcgtgccagatgcgcgtttacacgagagccctgaatactgtaaatgcactatct 67
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 7 tggggctcgtgccagatgcgcgtttacacggg--ccctgaatactgtaaatgcactatct 64
Query: 68 ggtacgacatctctcctg 85
||||||||||||||||||
Sbjct: 65 ggtacgacatctctcctg 82
>35550_bmo-mir-277:mirbase
Length = 122
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 50 actgtaaatgcactatctggtacgacatc 78
|||||||||||||||||||||||||||||
Sbjct: 77 actgtaaatgcactatctggtacgacatc 105
>37769_tca-mir-277:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 46 gaatactgtaaatgcactatctggtacgaca 76
|||| ||||||||||||||||||||||||||
Sbjct: 45 gaattctgtaaatgcactatctggtacgaca 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 cgtgccagatgcgcgtttacac 36
||||||||||||||||||||||
Sbjct: 9 cgtgccagatgcgcgtttacac 30
>37770_tca-mir-277:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 46 gaatactgtaaatgcactatctggtacgaca 76
|||| ||||||||||||||||||||||||||
Sbjct: 45 gaattctgtaaatgcactatctggtacgaca 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 cgtgccagatgcgcgtttacac 36
||||||||||||||||||||||
Sbjct: 9 cgtgccagatgcgcgtttacac 30
>35207_aae-mir-277:mirbase
Length = 95
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 60 tgtaaatgcactatctggtacgacat 85
>35302_aga-mir-277:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>36035_cqu-mir-277:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 61 tgtaaatgcactatctggtacgacat 86
>36119_dan-mir-277:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>36197_der-mir-277:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>36286_dgr-mir-277:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 54 tgtaaatgcactatctggtacgacat 79
>36417_dme-mir-277:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>36418_dme-mir-277:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>36794_dmo-mir-277:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 53 tgtaaatgcactatctggtacgacat 78
>36871_dpe-mir-277:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>36951_dps-mir-277:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>37157_dse-mir-277:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>37371_dvi-mir-277:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 54 tgtaaatgcactatctggtacgacat 79
>37450_dwi-mir-277:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 58 tgtaaatgcactatctggtacgacat 83
>37526_dya-mir-277:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgacat 77
||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacat 82
>35077_api-mir-277:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tgtaaatgcactatctggtacgaca 76
|||||||||||||||||||||||||
Sbjct: 55 tgtaaatgcactatctggtacgaca 79