miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37590_ngi-mir-283:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 2e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 15 gtagtcaaatatcagctggtaattctgggatacttattatgcagcccaggattcttgctg 74
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gtagtcaaatatcagctggtaattctgggatacttattatgcagcccaggattcttgctg 60

                             
Query: 75 gtatccggttacgaactgg 93
          |||||||||||||||||||
Sbjct: 61 gtatccggttacgaactgg 79




>35388_ame-mir-283:mirbase
          Length = 100

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 70/79 (88%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                      
Query: 15 gtagtcaaatatcagctggtaattctgggatacttattatgcagcccaggattcttgctg 74
          |||||||||||||||||||||||||||||||  | |  ||  | ||||||||||||||||
Sbjct: 15 gtagtcaaatatcagctggtaattctgggattttgacaat--aacccaggattcttgctg 72

                             
Query: 75 gtatccggttacgaactgg 93
          |||||||| ||||||||||
Sbjct: 73 gtatccggctacgaactgg 91




>36126_dan-mir-283:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>36204_der-mir-283:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>36293_dgr-mir-283:mirbase
          Length = 94

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>36430_dme-mir-283:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 21 aaatatcagctggtaattctggga 44




>36431_dme-mir-283:mirbase
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 21 aaatatcagctggtaattctggga 44




>36801_dmo-mir-283:mirbase
          Length = 94

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>36878_dpe-mir-283:mirbase
          Length = 94

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>36958_dps-mir-283:mirbase
          Length = 97

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 19 aaatatcagctggtaattctggga 42




>37164_dse-mir-283:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>37240_dsi-mir-283:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>37378_dvi-mir-283:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>37457_dwi-mir-283:mirbase
          Length = 97

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>37533_dya-mir-283:mirbase
          Length = 95

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 aaatatcagctggtaattctggga 44
          ||||||||||||||||||||||||
Sbjct: 16 aaatatcagctggtaattctggga 39




>35559_bmo-mir-283:mirbase
          Length = 83

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aaatatcagctggtaattctggg 43
          |||||||||||||||||||||||
Sbjct: 15 aaatatcagctggtaattctggg 37




>37785_tca-mir-283:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aaatatcagctggtaattctggg 43
          |||||||||||||||||||||||
Sbjct: 11 aaatatcagctggtaattctggg 33




>37786_tca-mir-283:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aaatatcagctggtaattctggg 43
          |||||||||||||||||||||||
Sbjct: 11 aaatatcagctggtaattctggg 33




>35213_aae-mir-283:mirbase
          Length = 103

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 aatatcagctggtaattctggg 43
          ||||||||||||||||||||||
Sbjct: 17 aatatcagctggtaattctggg 38




>36039_cqu-mir-283:mirbase
          Length = 110

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 aatatcagctggtaattctggg 43
          ||||||||||||||||||||||
Sbjct: 24 aatatcagctggtaattctggg 45




>38764_cte-mir-216b:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 22 aatatcagctggtaattctgggata 46
          |||||||||||||||||||| ||||
Sbjct: 9  aatatcagctggtaattctgagata 33




>35027_dpu-mir-283:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 20 caaatatcagctggtaattctggg 43
          ||||||||||| ||||||||||||
Sbjct: 24 caaatatcagcaggtaattctggg 47




>35307_aga-mir-283:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 aaatatcagctggtaattct 40
          ||||||||||||||||||||
Sbjct: 15 aaatatcagctggtaattct 34