miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37591_ngi-mir-305:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggaggctgcatgttaattgtacttcatcaggtgctctggtgattttgatacccggtgcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggctgcatgttaattgtacttcatcaggtgctctggtgattttgatacccggtgcct 60

                                      
Query: 61 gttggagcgcaattcatatgattgtgcc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gttggagcgcaattcatatgattgtgcc 88




>37622_nlo-mir-305:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggaggctgcatgttaattgtacttcatcaggtgctctggtgattttgatacccggtgcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggctgcatgttaattgtacttcatcaggtgctctggtgattttgatacccggtgcct 60

                                      
Query: 61 gttggagcgcaattcatatgattgtgcc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gttggagcgcaattcatatgattgtgcc 88




>35389_ame-mir-305:mirbase
          Length = 90

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggaggctgcatgttaattgtacttcatcaggtgctctggtgattttgatacccggtgcct 60
          ||||||||||||||||||||||||||||||||||||||||||  | |||||||||  |||
Sbjct: 1  ggaggctgcatgttaattgtacttcatcaggtgctctggtgaactcgatacccggcacct 60

                                      
Query: 61 gttggagcgcaattcatatgattgtgcc 88
          ||||||||||||||||||||| ||||||
Sbjct: 61 gttggagcgcaattcatatgactgtgcc 88




>34984_isc-mir-305:mirbase
          Length = 90

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 12 gttaattgtacttcatcaggtgctctgg 39
          ||||||||||||||||||||||||||||
Sbjct: 10 gttaattgtacttcatcaggtgctctgg 37




>35561_bmo-mir-305:mirbase
          Length = 91

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 16 attgtacttcatcaggtgctctggtgat 43
          ||||||||||||||||||||||||||||
Sbjct: 17 attgtacttcatcaggtgctctggtgat 44




>35309_aga-mir-305:mirbase
          Length = 90

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40




>36134_dan-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36212_der-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36302_dgr-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36445_dme-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36446_dme-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36808_dmo-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36884_dpe-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>36966_dps-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>37172_dse-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>37385_dvi-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>37464_dwi-mir-305:mirbase
          Length = 74

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>37541_dya-mir-305:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 16 attgtacttcatcaggtgctctggtg 41
          ||||||||||||||||||||||||||
Sbjct: 8  attgtacttcatcaggtgctctggtg 33




>35218_aae-mir-305:mirbase
          Length = 88

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 attgtacttcatcaggtgctctggt 40
          |||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39




>36041_cqu-mir-305:mirbase
          Length = 88

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 attgtacttcatcaggtgctctggt 40
          |||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39




>37788_tca-mir-305:mirbase
          Length = 75

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 attgtacttcatcaggtgctctggt 40
          |||||||||||||||||||||||||
Sbjct: 10 attgtacttcatcaggtgctctggt 34




>37789_tca-mir-305:mirbase
          Length = 75

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 16 attgtacttcatcaggtgctctggt 40
          |||||||||||||||||||||||||
Sbjct: 10 attgtacttcatcaggtgctctggt 34