miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37623_nlo-mir-315:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 4e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctctctatgcttttgattgttgctcagaaagcctcgatatcgatactggctttcgggca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gctctctatgcttttgattgttgctcagaaagcctcgatatcgatactggctttcgggca 60

                         
Query: 61 ataatcataatcacg 75
          |||||||||||||||
Sbjct: 61 ataatcataatcacg 75




>35392_ame-mir-315:mirbase
          Length = 82

 Score =  101 bits (51), Expect = 7e-23
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctctctatgcttttgattgttgctcagaaagcctcgatatcgatactggctttcgggca 60
          ||||| ||||||||||||||||||||||||||||| |||   |||| |||||||||||||
Sbjct: 1  gctctttatgcttttgattgttgctcagaaagccttgattatgatattggctttcgggca 60

                         
Query: 61 ataatcataatcacg 75
          |||||||||||||||
Sbjct: 61 ataatcataatcacg 75




>37798_tca-mir-315:mirbase
          Length = 79

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tgcttttgattgttgctcagaaagcc 34
          ||||||||||||||||||||||||||
Sbjct: 9  tgcttttgattgttgctcagaaagcc 34




>38775_cte-mir-315:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 cttttgattgttgctcagaaagcc 34
          ||||||||||||||||||||||||
Sbjct: 20 cttttgattgttgctcagaaagcc 43




>34896_sko-mir-315:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 ttttgattgttgctcagaaagcct 35
          ||||||||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaaagcct 44




>35085_api-mir-315:mirbase
          Length = 65

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 ttttgattgttgctcagaaagcct 35
          ||||||||||||||||||||||||
Sbjct: 1  ttttgattgttgctcagaaagcct 24




>36309_dgr-mir-315:mirbase
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 ttttgattgttgctcagaaagcct 35
          ||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcct 35




>38885_lgi-mir-315:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaaagcc 43




>35031_dpu-mir-315:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 21 ttttgattgttgctcagaaagcc 43




>35225_aae-mir-315:mirbase
          Length = 92

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 16 ttttgattgttgctcagaaagcc 38




>35314_aga-mir-315:mirbase
          Length = 76

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 8  ttttgattgttgctcagaaagcc 30




>36045_cqu-mir-315:mirbase
          Length = 93

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 17 ttttgattgttgctcagaaagcc 39




>36144_dan-mir-315:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>36226_der-mir-315:mirbase
          Length = 83

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>36467_dme-mir-315:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>36468_dme-mir-315:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>36815_dmo-mir-315:mirbase
          Length = 83

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>36890_dpe-mir-315:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>36974_dps-mir-315:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>37182_dse-mir-315:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>37258_dsi-mir-315:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>37393_dvi-mir-315a:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>37471_dwi-mir-315:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>37551_dya-mir-315-1:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>37552_dya-mir-315-2:mirbase
          Length = 84

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ttttgattgttgctcagaaagcc 34
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>25540_pma-mir-315:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 tttgattgttgctcagaaagcc 34
          ||||||||||||||||||||||
Sbjct: 11 tttgattgttgctcagaaagcc 32




>34986_isc-mir-315:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 gcttttgattgttgctcagaa 30
          |||||||||||||||||||||
Sbjct: 19 gcttttgattgttgctcagaa 39