miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37682_tca-bantam:mirbase
          Length = 81

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcagcgagacgaaactggttttcacagtgatttgacagatatatttgattctgagatcat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcagcgagacgaaactggttttcacagtgatttgacagatatatttgattctgagatcat 60

                               
Query: 61 tgtgaaagctgattttgttca 81
          |||||||||||||||||||||
Sbjct: 61 tgtgaaagctgattttgttca 81




>37628_nvi-bantam:mirbase
          Length = 87

 Score =  131 bits (66), Expect = 8e-32
 Identities = 72/74 (97%)
 Strand = Plus / Plus

                                                                      
Query: 7  agacgaaactggttttcacagtgatttgacagatatatttgattctgagatcattgtgaa 66
          |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 5  agacgaaactggttttcacaatgatttgacagatgtatttgattctgagatcattgtgaa 64

                        
Query: 67 agctgattttgttc 80
          ||||||||||||||
Sbjct: 65 agctgattttgttc 78




>35336_ame-bantam:mirbase
          Length = 87

 Score =  117 bits (59), Expect = 1e-27
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 9  acgaaactggttttcacagtgatttgacagatatatttgattctgagatcattgtgaaag 68
          |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 7  acgaaactggttttcacaatgatttgacagatagattcgattctgagatcattgtgaaag 66

                     
Query: 69 ctgattttgtt 79
          |||||||||||
Sbjct: 67 ctgattttgtt 77




>35510_bmo-bantam:mirbase
          Length = 90

 Score = 81.8 bits (41), Expect = 7e-17
 Identities = 66/73 (90%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                      
Query: 9  acgaaactggttttcacagtgatttgacagatatatttg-attctgagatcattgtgaaa 67
          |||||||||||||||| | |||||||||||||   |||| ||||||||||||||||||||
Sbjct: 12 acgaaactggttttcataatgatttgacagattgttttgtattctgagatcattgtgaaa 71

                       
Query: 68 gctgattttgttc 80
          ||| |||||||||
Sbjct: 72 gctaattttgttc 84




>34994_dpu-bantam:mirbase
          Length = 101

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 58/64 (90%), Gaps = 3/64 (4%)
 Strand = Plus / Plus

                                                                      
Query: 18 gttttcacagtgatttgacagatat-atttga--ttctgagatcattgtgaaagctgatt 74
          |||||| ||||||| || ||||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 24 gttttctcagtgatctgccagatattatttgaatttctgagatcattgtgaaagctgatt 83

              
Query: 75 ttgt 78
          ||||
Sbjct: 84 ttgt 87




>34957_isc-bantam:mirbase
          Length = 101

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 50 tctgagatcattgtgaaagctgattttgtt 79
          ||||||||||||||||||||||||||||||
Sbjct: 59 tctgagatcattgtgaaagctgattttgtt 88




>35040_api-bantam:mirbase
          Length = 71

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 48 attctgagatcattgtgaaagctgattt 75
          ||||||||||||||||||||||| ||||
Sbjct: 44 attctgagatcattgtgaaagctaattt 71




>36073_dan-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>36150_der-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>36232_dgr-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>36315_dme-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>36316_dme-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>36749_dmo-bantam:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 53 tgagatcattttgaaagctgattttgt 79




>36821_dpe-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>36897_dps-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>37109_dse-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>37188_dsi-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>37325_dvi-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>37400_dwi-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>37478_dya-bantam:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||||| ||||||||||||||||
Sbjct: 52 tgagatcattttgaaagctgattttgt 78




>38091_bma-bantam:mirbase
          Length = 91

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 44 tttgattctgagatcattgtgaaagct 70
          ||||| |||||||||||||||||||||
Sbjct: 46 tttgagtctgagatcattgtgaaagct 72




>35163_aae-bantam:mirbase
          Length = 71

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 52 tgagatcattgtgaaagctgatttt 76
          |||||||||| ||||||||||||||
Sbjct: 47 tgagatcattttgaaagctgatttt 71




>35164_aae-bantam:mirbase
          Length = 71

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 52 tgagatcattgtgaaagctgatttt 76
          |||||||||| ||||||||||||||
Sbjct: 47 tgagatcattttgaaagctgatttt 71




>36001_cqu-bantam:mirbase
          Length = 70

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 52 tgagatcattgtgaaagctgatttt 76
          |||||||||| ||||||||||||||
Sbjct: 46 tgagatcattttgaaagctgatttt 70




>38717_cte-bantam:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 48 attctgagatcattgtgaaa 67
          ||||||||||||||||||||
Sbjct: 57 attctgagatcattgtgaaa 76




>35268_aga-bantam:mirbase
          Length = 111

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 52 tgagatcattgtgaaagctgattttgt 78
          |||||||| | ||||||||||||||||
Sbjct: 70 tgagatcactttgaaagctgattttgt 96