miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41214_crt-MIR166b:mirbase
Length = 202
Score = 113 bits (57), Expect = 3e-26
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 82 catgaaaaaagggtatcggaccaggcttcattcccttcagaatcaaattcattgttt 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 catgaaaaaagggtatcggaccaggcttcattcccttcagaatcaaattcattgttt 202
Score = 91.7 bits (46), Expect = 1e-19
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 1 ggagaaaaatgattgtttctgaggggactgttgtctggctcgatgc 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ggagaaaaatgattgtttctgaggggactgttgtctggctcgatgc 110
>41225_csi-MIR166d:mirbase
Length = 126
Score = 103 bits (52), Expect = 3e-23
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 83 atgaaaaaagggtatcggaccaggcttcattcccttcagaatcaaattcatt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atgaaaaaagggtatcggaccaggcttcattcccttcagaatcaaattcatt 57
>41213_crt-MIR166a:mirbase
Length = 202
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 112 ttcccttcagaatcaaattcattgttt 138
|||||||||||||||||||||||||||
Sbjct: 1 ttcccttcagaatcaaattcattgttt 27
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 161 tcggaccaggcttcattccc 180
>40033_ath-MIR166b:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgaggggactgttgtctggctcga 43
||||||||||||||||||||||||
Sbjct: 2 tgaggggactgttgtctggctcga 25
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 96 tcggaccaggcttcattccc 115
>40032_ath-MIR166a:mirbase
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgaggggactgttgtctggctcga 43
||||||||||||||||||||||||
Sbjct: 16 tgaggggactgttgtctggctcga 39
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 134 tcggaccaggcttcattccc 153
>39822_aly-MIR166b:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgaggggactgttgtctggctcga 43
||||||||||||||||||||||||
Sbjct: 17 tgaggggactgttgtctggctcga 40
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 110 tcggaccaggcttcattccc 129
>41949_osa-MIR166m:mirbase
Length = 200
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccctt 118
||||||||||||||||||||||
Sbjct: 147 tcggaccaggcttcattccctt 168
>41937_osa-MIR166a:mirbase
Length = 145
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcaga 122
|||||||||||||||||||| |||||
Sbjct: 110 tcggaccaggcttcattcccctcaga 135
>41745_bdi-MIR166c:mirbase
Length = 172
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcaga 122
|||||||||||||||||||| |||||
Sbjct: 121 tcggaccaggcttcattcccctcaga 146
>41939_osa-MIR166c:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 92 gggtatcggaccaggcttcattccc 116
|||| ||||||||||||||||||||
Sbjct: 86 gggtttcggaccaggcttcattccc 110
>41885_hvu-MIR166b:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 92 gggtatcggaccaggcttcattccc 116
|||| ||||||||||||||||||||
Sbjct: 77 gggtttcggaccaggcttcattccc 101
>41170_aqc-MIR166d:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 95 tatcggaccaggcttcattcc 115
|||||||||||||||||||||
Sbjct: 103 tatcggaccaggcttcattcc 123
>40267_bna-MIR166d:mirbase
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ctgaggggactgttgtctggctcga 43
||||| |||||||||||||||||||
Sbjct: 17 ctgagaggactgttgtctggctcga 41
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 77 tcggaccaggcttcattccc 96
>39735_smo-MIR166c:mirbase
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 107 tcggaccaggcttcattcccctcag 131
>39734_smo-MIR166b:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 99 tcggaccaggcttcattcccctcag 123
>39470_ppt-MIR166g:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 96 tcggaccaggcttcattcccctcag 120
>39469_ppt-MIR166f:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 74 tcggaccaggcttcattcccctcag 98
>39468_ppt-MIR166e:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 96 tcggaccaggcttcattcccctcag 120
>39465_ppt-MIR166b:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 74 tcggaccaggcttcattcccctcag 98
>39464_ppt-MIR166a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattcccttcag 121
|||||||||||||||||||| ||||
Sbjct: 74 tcggaccaggcttcattcccctcag 98
>42725_zma-MIR166i:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 63 tcggaccaggcttcattccc 82
>42724_zma-MIR166h:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 56 tcggaccaggcttcattccc 75
>42723_zma-MIR166g:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 106 tcggaccaggcttcattccc 125
>42722_zma-MIR166f:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 58 tcggaccaggcttcattccc 77
>42721_zma-MIR166e:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccc 86
>42720_zma-MIR166d:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 84 tcggaccaggcttcattccc 103
>42719_zma-MIR166c:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tcggaccaggcttcattccc 116
||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattccc 91
