miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38490_crm-mir-35a-2:mirbase
          Length = 89

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 50 tatcaccgggtgaacattggtgcaggtccaatcc 83
          ||||||||||||||||||||||||||||||||||
Sbjct: 52 tatcaccgggtgaacattggtgcaggtccaatcc 85

>38500_crm-mir-35g:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 49 ctatcaccgggtgaacattggt 70
          ||||||||||||||||||||||
Sbjct: 65 ctatcaccgggtgaacattggt 86

>38142_cbr-mir-35c-1:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 50 tatcaccgggtgaacattggtgcaggtccaatcc 83
          |||||||||||||| |||||| ||||||| ||||
Sbjct: 66 tatcaccgggtgaaaattggtacaggtccgatcc 99

>38143_cbr-mir-35c-2:mirbase
          Length = 85

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 50 tatcaccgggtgaacattggtgcaggtccaatcc 83
          |||||||||||||| |||||| ||||||| ||||
Sbjct: 52 tatcaccgggtgaaaattggtacaggtccgatcc 85