miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38489_crm-mir-35a-1:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tatcaccgggtgaacattggtgcaggtccaatcc 85
||||||||||||||||||||||||||||||||||
Sbjct: 50 tatcaccgggtgaacattggtgcaggtccaatcc 83
>38495_crm-mir-35d-1:mirbase
Length = 91
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65
||||||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 67
>38142_cbr-mir-35c-1:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 ttatcaccgggtgaacattggtgcaggtccaatcc 85
||||||||||||||| |||||| ||||||| ||||
Sbjct: 65 ttatcaccgggtgaaaattggtacaggtccgatcc 99
>38143_cbr-mir-35c-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 ttatcaccgggtgaacattggtgcaggtccaatcc 85
||||||||||||||| |||||| ||||||| ||||
Sbjct: 51 ttatcaccgggtgaaaattggtacaggtccgatcc 85
>38500_crm-mir-35g:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 tatcaccgggtgaacattggt 72
|||||||||||||||||||||
Sbjct: 66 tatcaccgggtgaacattggt 86
>38496_crm-mir-35d-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65
|||||| || || |||| ||| ||||| | ||||||||||||||||||
Sbjct: 20 ctggttctcgccgcggtcatatttcaaatatgattatcaccgggtgaa 67
>38492_crm-mir-35c-1:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65
||||||||| | |||| ||||||| || ||||||||||||||||||
Sbjct: 21 ctggttttcgctgcggtgatacttcgagaatgattatcaccgggtgaa 68
>38491_crm-mir-35b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 30 tcggttatacttcaagtgtgattatcaccgggtgaa 65
||||| ||| |||||| ||||||||||||||||||
Sbjct: 33 tcggtgatatttcaagaatgattatcaccgggtgaa 68
