miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38494_crm-mir-35c-3:mirbase
Length = 95
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 60
||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 1 tcggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcac 60
Query: 61 cgggtgaaaatcagggcaggtccgat 86
||||||||||||||||||||||||||
Sbjct: 61 cgggtgaaaatcagggcaggtccgat 86
>38493_crm-mir-35c-2:mirbase
Length = 117
Score = 125 bits (63), Expect = 6e-30
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
||||||||||||||| ||||| |||||||| |||||||| ||| |||| |||||||||||
Sbjct: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
Query: 63 ggtgaaaatcagggcaggtccgattcc 89
|||||||||||||||||||||||||||
Sbjct: 71 ggtgaaaatcagggcaggtccgattcc 97
>38491_crm-mir-35b:mirbase
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 60
||||| |||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 1 tcggtgggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcac 60
Query: 61 cgggtgaaaatcagggcaggtccgat 86
||||||||||||| ||||||||||||
Sbjct: 61 cgggtgaaaatcaaggcaggtccgat 86
>38495_crm-mir-35d-1:mirbase
Length = 91
Score = 99.6 bits (50), Expect = 3e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
||||||||||| ||| ||||||||||||| |||| ||| ||| || |||||||||||||
Sbjct: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
Query: 63 ggtgaaaatcagggcaggtccgattccacc 92
|||||||||||| ||||| |||||||||||
Sbjct: 62 ggtgaaaatcagagcagggccgattccacc 91
>38496_crm-mir-35d-2:mirbase
Length = 92
Score = 77.8 bits (39), Expect = 1e-15
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
||||||||||| | | |||||||| |||| ||||| ||| ||| | |||||||||||||
Sbjct: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
Query: 63 ggtgaaaatcagggcaggtccgattccaccg 93
|||||||||||| ||||| ||||| ||||||
Sbjct: 62 ggtgaaaatcagagcagggccgatcccaccg 92
>38145_cbr-mir-35e:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gattatcaccgggtgaaaatcagggcaggtccga 85
|||||||||||||||| ||| ||| |||||||||
Sbjct: 64 gattatcaccgggtgacaattaggacaggtccga 97
>38490_crm-mir-35a-2:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 21 ctggttttcgctgcggtgatacttcgagaatgattatcaccgggtgaa 68
||||||||| | |||| ||||||| || ||||||||||||||||||
Sbjct: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65
