miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38493_crm-mir-35c-2:mirbase
Length = 117
Score = 135 bits (68), Expect = 6e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||||||
Sbjct: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
Query: 63 ggtgaaaatcagggcaggtccgat 86
||||||||||||||||||||||||
Sbjct: 71 ggtgaaaatcagggcaggtccgat 94
>38491_crm-mir-35b:mirbase
Length = 94
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcac 60
||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 1 tcggtgggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcac 60
Query: 61 cgggtgaaaatcagggcaggtccgatc 87
||||||||||||| |||||||||||||
Sbjct: 61 cgggtgaaaatcaaggcaggtccgatc 87
>38492_crm-mir-35c-1:mirbase
Length = 94
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcac 60
||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 1 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 60
Query: 61 cgggtgaaaatcagggcaggtccgat 86
||||||||||||||||||||||||||
Sbjct: 61 cgggtgaaaatcagggcaggtccgat 86
>38495_crm-mir-35d-1:mirbase
Length = 91
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
||||||||||| |||||||||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
Query: 63 ggtgaaaatcagggcaggtccgat 86
|||||||||||| ||||| |||||
Sbjct: 62 ggtgaaaatcagagcagggccgat 85
>38496_crm-mir-35d-2:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 8e-14
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
||||||||||| | | |||||||| | || |||| ||||||| | |||||||||||||
Sbjct: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
Query: 63 ggtgaaaatcagggcaggtccgatccca 90
|||||||||||| ||||| |||||||||
Sbjct: 62 ggtgaaaatcagagcagggccgatccca 89
>38145_cbr-mir-35e:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gattatcaccgggtgaaaatcagggcaggtccga 85
|||||||||||||||| ||| ||| |||||||||
Sbjct: 64 gattatcaccgggtgacaattaggacaggtccga 97
