miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38496_crm-mir-35d-2:mirbase
Length = 92
Score = 131 bits (66), Expect = 9e-32
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
Query: 62 ggtgaaaatcagagcagggccgattccacc 91
|||||||||||||||||||||||| |||||
Sbjct: 62 ggtgaaaatcagagcagggccgatcccacc 91
>38493_crm-mir-35c-2:mirbase
Length = 117
Score = 109 bits (55), Expect = 3e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||| ||||||||| ||||||| ||||| |||||||||| | |||||||||||
Sbjct: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
Query: 62 ggtgaaaatcagagcagggccgattcc 88
|||||||||||| ||||| ||||||||
Sbjct: 71 ggtgaaaatcagggcaggtccgattcc 97
>38494_crm-mir-35c-3:mirbase
Length = 95
Score = 103 bits (52), Expect = 2e-23
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||| |||||||||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
Query: 62 ggtgaaaatcagagcagggccgat 85
|||||||||||| ||||| |||||
Sbjct: 63 ggtgaaaatcagggcaggtccgat 86
>38492_crm-mir-35c-1:mirbase
Length = 94
Score = 99.6 bits (50), Expect = 3e-22
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||| ||| ||||||||||||| |||| ||| ||| || |||||||||||||
Sbjct: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
Query: 62 ggtgaaaatcagagcagggccgattccacc 91
|||||||||||| ||||| |||||||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgattccacc 92
>38491_crm-mir-35b:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 6 ggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccgggtg 65
||||||| ||| |||||||||| || ||||| |||||||||| |||||||||||||||||
Sbjct: 7 ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66
Query: 66 aaaatcagagcagggccgat 85
||||||| ||||| |||||
Sbjct: 67 aaaatcaaggcaggtccgat 86
>38490_crm-mir-35a-2:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 67
||||||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65