miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38496_crm-mir-35d-2:mirbase
          Length = 92

 Score =  131 bits (66), Expect = 9e-32
 Identities = 84/90 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
          ||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 2  ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61

                                        
Query: 62 ggtgaaaatcagagcagggccgattccacc 91
          |||||||||||||||||||||||| |||||
Sbjct: 62 ggtgaaaatcagagcagggccgatcccacc 91




>38493_crm-mir-35c-2:mirbase
          Length = 117

 Score =  109 bits (55), Expect = 3e-25
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
          ||||||||||| ||||||||| ||||||| ||||| |||||||||| | |||||||||||
Sbjct: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70

                                     
Query: 62 ggtgaaaatcagagcagggccgattcc 88
          |||||||||||| ||||| ||||||||
Sbjct: 71 ggtgaaaatcagggcaggtccgattcc 97




>38494_crm-mir-35c-3:mirbase
          Length = 95

 Score =  103 bits (52), Expect = 2e-23
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
          ||||||||||| |||||||||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 3  ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62

                                  
Query: 62 ggtgaaaatcagagcagggccgat 85
          |||||||||||| ||||| |||||
Sbjct: 63 ggtgaaaatcagggcaggtccgat 86




>38492_crm-mir-35c-1:mirbase
          Length = 94

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
          ||||||||||| ||| |||||||||||||  |||| ||| ||| || |||||||||||||
Sbjct: 3  ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62

                                        
Query: 62 ggtgaaaatcagagcagggccgattccacc 91
          |||||||||||| ||||| |||||||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgattccacc 92




>38491_crm-mir-35b:mirbase
          Length = 94

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                      
Query: 6  ggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccgggtg 65
          ||||||| ||| |||||||||| || ||||| |||||||||| |||||||||||||||||
Sbjct: 7  ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66

                              
Query: 66 aaaatcagagcagggccgat 85
          |||||||  ||||| |||||
Sbjct: 67 aaaatcaaggcaggtccgat 86




>38490_crm-mir-35a-2:mirbase
          Length = 89

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                          
Query: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 67
          ||||||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65