miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38495_crm-mir-35d-1:mirbase
          Length = 91

 Score =  131 bits (66), Expect = 9e-32
 Identities = 84/90 (93%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
          ||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 2  ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61

                                        
Query: 62 ggtgaaaatcagagcagggccgatcccacc 91
          |||||||||||||||||||||||| |||||
Sbjct: 62 ggtgaaaatcagagcagggccgattccacc 91




>38492_crm-mir-35c-1:mirbase
          Length = 94

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
          ||||||||||| | | |||||||| |||| ||||| ||| ||| |  |||||||||||||
Sbjct: 3  ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62

                                         
Query: 62 ggtgaaaatcagagcagggccgatcccaccg 92
          |||||||||||| ||||| ||||| ||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgattccaccg 93




>38494_crm-mir-35c-3:mirbase
          Length = 95

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
          ||||||||||| | | |||||||| | ||  |||| ||||||| |  |||||||||||||
Sbjct: 3  ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62

                                      
Query: 62 ggtgaaaatcagagcagggccgatccca 89
          |||||||||||| ||||| |||||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgatccca 90




>38493_crm-mir-35c-2:mirbase
          Length = 117

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcacc 60
          |||||||||||| | | ||||| || ||||  |||| |||||||||  | ||||||||||
Sbjct: 10 tggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcacc 69

                                   
Query: 61 gggtgaaaatcagagcagggccgat 85
          ||||||||||||| ||||| |||||
Sbjct: 70 gggtgaaaatcagggcaggtccgat 94




>38491_crm-mir-35b:mirbase
          Length = 94

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                      
Query: 33 cggtcatatttcaaatatgattatcaccgggtgaaaatcagagcagggccgatcccaccg 92
          |||| |||||||||  ||||||||||||||||||||||||  ||||| |||||| |||||
Sbjct: 34 cggtgatatttcaagaatgattatcaccgggtgaaaatcaaggcaggtccgatctcaccg 93




>38490_crm-mir-35a-2:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                          
Query: 20 ctggttctcgccgcggtcatatttcaaatatgattatcaccgggtgaa 67
          |||||| || || |||| ||| ||||| | ||||||||||||||||||
Sbjct: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65