miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38509_crm-mir-46:mirbase
          Length = 108

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgtcatggagtcgctctcttcag 93
          |||||||||||||||||||||||
Sbjct: 68 tgtcatggagtcgctctcttcag 90





>38157_cbr-mir-46:mirbase
          Length = 94

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgtcatggagtcgctctcttcag 93
          |||||||||||||||||||||||
Sbjct: 58 tgtcatggagtcgctctcttcag 80





>38283_cel-mir-46:mirbase
          Length = 97

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 71 tgtcatggagtcgctctcttcag 93
          |||||||||||||||||||||||
Sbjct: 61 tgtcatggagtcgctctcttcag 83





>38510_crm-mir-47:mirbase
          Length = 105

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 18 gagaccgaagagagccttctgttgacagt 46
          ||||| ||||||||| |||||||||||||
Sbjct: 15 gagactgaagagagcattctgttgacagt 43



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 71 tgtcatggagtcgctctcttcagg 94
          |||||||||| |||||||||||||
Sbjct: 62 tgtcatggaggcgctctcttcagg 85





>38158_cbr-mir-47:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 71 tgtcatggagtcgctctcttcagg 94
          |||||||||| |||||||||||||
Sbjct: 57 tgtcatggaggcgctctcttcagg 80