miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39309_cre-MIR909:mirbase
          Length = 471

 Score =  283 bits (143), Expect = 6e-77
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                       
Query: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388

                                                                       
Query: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448

                                  
Query: 449 ccttcagccacttgtgcgggaac 471
           |||||||||||||||||||||||
Sbjct: 449 ccttcagccacttgtgcgggaac 471



 Score =  274 bits (138), Expect = 6e-74
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60

                                                                       
Query: 61  ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120

                             
Query: 121 gccccgctccagggcctt 138
           ||||||||||||||||||
Sbjct: 121 gccccgctccagggcctt 138



 Score =  182 bits (92), Expect = 2e-46
 Identities = 129/140 (92%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                       
Query: 333 agaaggctccggagcggggcaggcc-caggcagggccattcagggtcaagtttgcatgcc 391
           ||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 140 agaaggccctggagcggggcaggccgcaggcagggccattcagggtcatgtttgcatgcc 81

                                                                       
Query: 392 cgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtgacct 451
           |||||||||||  ||||||| |||||||||||||||||||||| ||| |||||| |||||
Sbjct: 80  cgtgtggcaaggagctgcgggaccacatggccaccgtgtcggcaaagagctccgcgacct 21

                               
Query: 452 tcagccacttgtgcgggaac 471
           |||||||| |||||||||||
Sbjct: 20  tcagccacgtgtgcgggaac 1



 Score =  178 bits (90), Expect = 3e-45
 Identities = 121/130 (93%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
           ||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||| 
Sbjct: 471 gttcccgcacaagtggctgaaggtcacggagcccttcgccgacacggtggccatgtggta 412

                                                                       
Query: 61  ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
           |||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 411 ccgcagcgtcttgccacacgggcatgcaaacttgaccctgaatggccctgcctg-ggcct 353

                     
Query: 121 gccccgctcc 130
           ||||||||||
Sbjct: 352 gccccgctcc 343



 Score =  129 bits (65), Expect = 2e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                       
Query: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261

                
Query: 262 cagcg 266
           |||||
Sbjct: 262 cagcg 266




>39308_cre-MIR909:mirbase
          Length = 471

 Score =  283 bits (143), Expect = 6e-77
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                       
Query: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggatagaaggctccggagcggggcaggcccaggcagggccattcagggtcaagtttgcat 388

                                                                       
Query: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcccgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtga 448

                                  
Query: 449 ccttcagccacttgtgcgggaac 471
           |||||||||||||||||||||||
Sbjct: 449 ccttcagccacttgtgcgggaac 471



 Score =  274 bits (138), Expect = 6e-74
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60

                                                                       
Query: 61  ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120

                             
Query: 121 gccccgctccagggcctt 138
           ||||||||||||||||||
Sbjct: 121 gccccgctccagggcctt 138



 Score =  182 bits (92), Expect = 2e-46
 Identities = 129/140 (92%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                       
Query: 333 agaaggctccggagcggggcaggcc-caggcagggccattcagggtcaagtttgcatgcc 391
           ||||||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 140 agaaggccctggagcggggcaggccgcaggcagggccattcagggtcatgtttgcatgcc 81

                                                                       
Query: 392 cgtgtggcaagacgctgcggtaccacatggccaccgtgtcggcgaagggctccgtgacct 451
           |||||||||||  ||||||| |||||||||||||||||||||| ||| |||||| |||||
Sbjct: 80  cgtgtggcaaggagctgcgggaccacatggccaccgtgtcggcaaagagctccgcgacct 21

                               
Query: 452 tcagccacttgtgcgggaac 471
           |||||||| |||||||||||
Sbjct: 20  tcagccacgtgtgcgggaac 1



 Score =  178 bits (90), Expect = 3e-45
 Identities = 121/130 (93%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcccgcacacgtggctgaaggtcgcggagctctttgccgacacggtggccatgtggtc 60
           ||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||| 
Sbjct: 471 gttcccgcacaagtggctgaaggtcacggagcccttcgccgacacggtggccatgtggta 412

                                                                       
Query: 61  ccgcagctccttgccacacgggcatgcaaacatgaccctgaatggccctgcctgcggcct 120
           |||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 411 ccgcagcgtcttgccacacgggcatgcaaacttgaccctgaatggccctgcctg-ggcct 353

                     
Query: 121 gccccgctcc 130
           ||||||||||
Sbjct: 352 gccccgctcc 343



 Score =  129 bits (65), Expect = 2e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                       
Query: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcgggctcctgctgcaccggcagtagcgccagcagctggagcaggtacagggcggccgc 261

                
Query: 262 cagcg 266
           |||||
Sbjct: 262 cagcg 266