miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41237_csi-MIR390:mirbase
          Length = 154

 Score =  281 bits (142), Expect = 7e-77
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   aaagtaaagaagaatctgttaagctcaggagggatagcgccatgggtgccatgaatatgg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaagtaaagaagaatctgttaagctcaggagggatagcgccatgggtgccatgaatatgg 60

                                                                       
Query: 67  gaatgatctagggtttcatgataaataatgggcactggcgctatccatcctgagtttcat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaatgatctagggtttcatgataaataatgggcactggcgctatccatcctgagtttcat 120

                                 
Query: 127 ggcttcttcttactctctctct 148
           ||||||||||||||||||||||
Sbjct: 121 ggcttcttcttactctctctct 142




>41052_ghr-MIR390b:mirbase
          Length = 132

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 15 gaagaatctgttaagctcaggagggatagcgccatgg 51
          |||||||||||||||||||||||||||||||||||||
Sbjct: 6  gaagaatctgttaagctcaggagggatagcgccatgg 42



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 104 gcgctatccatcctgagtttcatggcttcttctt 137
           ||||||||||||||||||||||| | ||||||||
Sbjct: 94  gcgctatccatcctgagtttcatcggttcttctt 127




>41051_ghr-MIR390a:mirbase
          Length = 124

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 15 gaagaatctgttaagctcaggagggatagcgccatgg 51
          |||||||||||||||||||||||||||||||||||||
Sbjct: 3  gaagaatctgttaagctcaggagggatagcgccatgg 39



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 104 gcgctatccatcctgagtttcatggcttcttctt 137
           ||||||||||||||||||||||| | ||||||||
Sbjct: 91  gcgctatccatcctgagtttcatcggttcttctt 124




>41053_ghr-MIR390c:mirbase
          Length = 114

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 17 agaatctgttaagctcaggagggatagcgccatgg 51
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatgg 35



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 104 gcgctatccatcctgagtttcat 126
           |||||||||||||||||||||||
Sbjct: 87  gcgctatccatcctgagtttcat 109




>39862_aly-MIR390a:mirbase
          Length = 129

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                     
Query: 8  aagtaaagaagaatctgttaagctcaggagggatagcgccatg 50
          ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 10 aagtagagaagaatctgtaaagctcaggagggatagcgccatg 52



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 102 tggcgctatccatcctgagtttcatggcttcttcttact 140
           ||||||||||||||||||||||||| |  ||||||||||
Sbjct: 78  tggcgctatccatcctgagtttcattggctcttcttact 116




>41640_vvi-MIR390:mirbase
          Length = 140

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 17 agaatctgttaagctcaggagggatagcgccatg 50
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatg 34



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 102 tggcgctatccatcctgagtttcatggcttcttc 135
           |||||||||| ||||||||||||| || ||||||
Sbjct: 107 tggcgctatctatcctgagtttcacgggttcttc 140




>41413_ptc-MIR390a:mirbase
          Length = 119

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 17 agaatctgttaagctcaggagggatagcgccatg 50
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccatg 34




>40072_ath-MIR390a:mirbase
          Length = 107

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 14 agaagaatctgttaagctcaggagggatagcgccatg 50
          |||||||||||| ||||||||||||||||||||||||
Sbjct: 5  agaagaatctgtaaagctcaggagggatagcgccatg 41



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 102 tggcgctatccatcctgagtttcatggcttcttcttact 140
           ||||||||||||||||||||||||| |  ||||||||||
Sbjct: 67  tggcgctatccatcctgagtttcattggctcttcttact 105




>40294_bna-MIR390c:mirbase
          Length = 128

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 83  tggcgctatccatcctgagttccatggcttcttctt 118



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 9  agtaaagaagaatctgttaagctcaggagggatagcgccatg 50
          |||| ||||| | |||| ||||||||||||||||||||||||
Sbjct: 5  agtagagaagtagctgtaaagctcaggagggatagcgccatg 46




>40293_bna-MIR390b:mirbase
          Length = 105

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 14 agaagaatctgttaagctcaggagggatagcgccat 49
          |||||||||||| |||||||||||||||||||||||
Sbjct: 5  agaagaatctgtaaagctcaggagggatagcgccat 40



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 102 tggcgctatccatcctgagtttcatggcttcttcttact 140
           ||||||| ||||||||||||||||| |  ||||||||||
Sbjct: 65  tggcgctgtccatcctgagtttcattggctcttcttact 103




>41416_ptc-MIR390d:mirbase
          Length = 106

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 17 agaatctgttaagctcaggagggatagcgcc 47
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 102 tggcgctatccatcctgagttt 123
           ||||||||||||||||||||||
Sbjct: 77  tggcgctatccatcctgagttt 98




>41415_ptc-MIR390c:mirbase
          Length = 123

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 20 atctgttaagctcaggagggatagcgccatg 50
          |||||||||||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgccatg 34




>41414_ptc-MIR390b:mirbase
          Length = 106

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 17 agaatctgttaagctcaggagggatagcgcc 47
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 102 tggcgctatccatcctgagtttcatggctt 131
           ||||||||||||||||||||||||| ||||
Sbjct: 77  tggcgctatccatcctgagtttcattgctt 106




>40468_gma-MIR390a:mirbase
          Length = 105

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 17 agaatctgttaagctcaggagggatagcgccatgg 51
          ||||||||| |||||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccatgg 35



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 104 gcgctatccatcctgagtttcatggcttct 133
           ||||||||||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcatggcttct 96




>40467_gma-MIR390a:mirbase
          Length = 105

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 17 agaatctgttaagctcaggagggatagcgccatgg 51
          ||||||||| |||||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccatgg 35



 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 104 gcgctatccatcctgagtttcatggcttct 133
           ||||||||||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcatggcttct 96




>41131_tcc-MIR390b:mirbase
          Length = 120

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 17 agaatctgttaagctcaggagggatagcgccat 49
          ||||||||| |||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 101 ctggcgctatccatcctgagtttcatggcttcttc 135
           ||||||||||| |||||||||||||||| ||||||
Sbjct: 76  ctggcgctatctatcctgagtttcatgggttcttc 110




>41130_tcc-MIR390a:mirbase
          Length = 129

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 9  agtaaagaagaatctgttaagctcaggagggatagcgccat 49
          |||| ||||||  ||||||||||||||||||||||||||||
Sbjct: 3  agtatagaagagcctgttaagctcaggagggatagcgccat 43



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 104 gcgctatccatcctgagtttcatggcttcttcttactct 142
           ||||||||||||||||||||||| | |||||||| ||||
Sbjct: 88  gcgctatccatcctgagtttcatcggttcttcttgctct 126




>40705_mtr-MIR390:mirbase
          Length = 100

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 22 ctgttaagctcaggagggatagcgccat 49
          ||||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgccat 28



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 104 gcgctatccatcctgagtttcatgg 128
           |||||||||||||||||||||||||
Sbjct: 76  gcgctatccatcctgagtttcatgg 100




>40292_bna-MIR390a:mirbase
          Length = 144

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
           |||||||||||||||||||||  |||||||||||||
Sbjct: 93  tggcgctatccatcctgagttctatggcttcttctt 128



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 22 ctgttaagctcaggagggatagcgccatg 50
          |||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56




>40073_ath-MIR390b:mirbase
          Length = 120

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
           ||||||||||||||||||||| ||| ||||||||||
Sbjct: 85  tggcgctatccatcctgagttccatagcttcttctt 120



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 27 aagctcaggagggatagcgccatgg 51
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39




>39863_aly-MIR390b:mirbase
          Length = 127

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
           ||||||||||||||||||||| ||| ||||||||||
Sbjct: 89  tggcgctatccatcctgagttccatagcttcttctt 124



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 27 aagctcaggagggatagcgccatg 50
          ||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42




>40372_rco-MIR390b:mirbase
          Length = 122

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 26 taagctcaggagggatagcgccatgg 51
          ||||||||||||||||||||||||||
Sbjct: 5  taagctcaggagggatagcgccatgg 30



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 104 gcgctatccatcctgagtttcat 126
           |||||||||||||||||||||||
Sbjct: 96  gcgctatccatcctgagtttcat 118




>40371_rco-MIR390a:mirbase
          Length = 108

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 22 ctgttaagctcaggagggatagcgcc 47
          ||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 102 tggcgctatccatcctgagtttca 125
           ||||||||||||||||||||||||
Sbjct: 80  tggcgctatccatcctgagtttca 103




>40469_gma-MIR390b:mirbase
          Length = 103

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 agaatctgttaagctcaggagggatagc 44
          ||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagc 28



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 102 tggcgctatccatcctgagtttcatggcttct 133
           |||||||||| ||| |||| ||||||||||||
Sbjct: 72  tggcgctatctatcttgagcttcatggcttct 103




>39485_ppt-MIR390a:mirbase
          Length = 137

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 27 aagctcaggagggatagcgccat 49
          |||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38




>42785_zma-MIR390b:mirbase
          Length = 192

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42784_zma-MIR390a:mirbase
          Length = 181

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42565_sbi-MIR390:mirbase
          Length = 179

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23




>41996_osa-MIR390:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41773_bdi-MIR390b:mirbase
          Length = 186

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41772_bdi-MIR390:mirbase
          Length = 209

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51




>39486_ppt-MIR390b:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 27 aagctcaggagggatagcgcc 47
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48




>39487_ppt-MIR390c:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 28 agctcaggagggatagcgcc 47
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33