miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41251_csi-MIR403:mirbase
          Length = 130

 Score =  258 bits (130), Expect = 1e-69
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaggcatgtttcgggtttgtgcgtgaatttaataaaataaccgcttcttttaatctcgtt 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaggcatgtttcgggtttgtgcgtgaatttaataaaataaccgcttcttttaatctcgtt 60

                                                                       
Query: 70  cccccattttttgttagtaacaaatttttgccgtcagtgttagattcacgcacaaactcg 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cccccattttttgttagtaacaaatttttgccgtcagtgttagattcacgcacaaactcg 120

                     
Query: 130 tgatgtgtct 139
           ||||||||||
Sbjct: 121 tgatgtgtct 130




>41156_tcc-MIR403b:mirbase
          Length = 123

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
           |||||||||||||||||||||||||||| |||||
Sbjct: 80  gtgttagattcacgcacaaactcgtgatctgtct 113




>41155_tcc-MIR403a:mirbase
          Length = 126

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 107 tgttagattcacgcacaaactcgtgatgtgtcttttc 143
           |||||||||||||||||||||||| || |||||||||
Sbjct: 84  tgttagattcacgcacaaactcgtaatctgtcttttc 120



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 18 tttcgggtttgtgcgtgaatttaataaaa 46
          |||| ||||||||||||||||||||||||
Sbjct: 16 tttcaggtttgtgcgtgaatttaataaaa 44




>40390_rco-MIR403b:mirbase
          Length = 98

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 106 gtgttagattcacgcacaaactcgtgat 133
           ||||||||||||||||||||||||||||
Sbjct: 70  gtgttagattcacgcacaaactcgtgat 97




>40389_rco-MIR403a:mirbase
          Length = 95

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 106 gtgttagattcacgcacaaactcgtgat 133
           ||||||||||||||||||||||||||||
Sbjct: 67  gtgttagattcacgcacaaactcgtgat 94




>41679_vvi-MIR403c:mirbase
          Length = 115

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 108 gttagattcacgcacaaactcgtgatgtgtc 138
           |||||||||||||||||||||||||| ||||
Sbjct: 84  gttagattcacgcacaaactcgtgatctgtc 114




>39896_aly-MIR403:mirbase
          Length = 125

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 109 ttagattcacgcacaaactcgtgatgtgtcttttc 143
           |||||||||||||||||||||| || |||||||||
Sbjct: 91  ttagattcacgcacaaactcgtaatctgtcttttc 125




>41680_vvi-MIR403d:mirbase
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
           |||||||||||||||||||||||| ||| |||||
Sbjct: 53  gtgttagattcacgcacaaactcgggatctgtct 86




>41678_vvi-MIR403b:mirbase
          Length = 86

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 106 gtgttagattcacgcacaaactcgtgatgtgtct 139
           |||||||||||||||||||||||| ||| |||||
Sbjct: 53  gtgttagattcacgcacaaactcgggatctgtct 86




>41677_vvi-MIR403a:mirbase
          Length = 115

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 108 gttagattcacgcacaaactcgtga 132
           |||||||||||||||||||||||||
Sbjct: 84  gttagattcacgcacaaactcgtga 108




>40101_ath-MIR403:mirbase
          Length = 135

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 109 ttagattcacgcacaaactcgtgatgtgtcttt 141
           |||||||||||||||||||||| || |||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtcttt 135




>41682_vvi-MIR403f:mirbase
          Length = 108

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 109 ttagattcacgcacaaactcgtgatgtgtct 139
           |||||||||||||||||||||| || |||||
Sbjct: 78  ttagattcacgcacaaactcgtaatctgtct 108




>41681_vvi-MIR403e:mirbase
          Length = 115

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 108 gttagattcacgcacaaactcgtgatgtgtc 138
           |||||||||||||||||||||| ||| ||||
Sbjct: 84  gttagattcacgcacaaactcgcgatctgtc 114




>41461_ptc-MIR403b:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 108 gttagattcacgcacaaactcgtgatgtgtc 138
           |||||||||||||||||||||| ||| ||||
Sbjct: 70  gttagattcacgcacaaactcgcgatctgtc 100




>41460_ptc-MIR403a:mirbase
          Length = 132

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 109 ttagattcacgcacaaactcgt 130
           ||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgt 124




>41462_ptc-MIR403c:mirbase
          Length = 79

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 109 ttagattcacgcacaaactcg 129
           |||||||||||||||||||||
Sbjct: 59  ttagattcacgcacaaactcg 79