miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40261_bna-MIR159:mirbase
          Length = 183

 Score =  363 bits (183), Expect = e-101
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 60

                                                                       
Query: 63  gaatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaatcccataagccctaatccttatatataaaaaggatttggttatatggcttacatatc 120

                                                                       
Query: 123 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagctct 180

              
Query: 183 aca 185
           |||
Sbjct: 181 aca 183




>39804_aly-MIR159a:mirbase
          Length = 222

 Score =  274 bits (138), Expect = 2e-74
 Identities = 176/188 (93%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagct 60
           |||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 18  aagtagagctccttgaagttcaaacgagagttgagcagggtaaagaaaagctgctaagct 77

                                                                       
Query: 61  atgaatcccataagccctaatccttata---tataaaaaggatttggttatatggcttac 117
           ||| ||||||||||||||||||||||||    | |||||||||||||||||||||||| |
Sbjct: 78  atggatcccataagccctaatccttataaagaaaaaaaaggatttggttatatggcttgc 137

                                                                       
Query: 118 atatctcaggagctttaacttgccctttaattgcttttactcttctttggattgaaggga 177
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 138 atatctcaggagctttaacttgccctttaatggcttttactcttctttggattgaaggga 197

                   
Query: 178 gctctaca 185
           ||||||||
Sbjct: 198 gctctaca 205




>40016_ath-MIR159a:mirbase
          Length = 184

 Score =  248 bits (125), Expect = 1e-66
 Identities = 170/184 (92%), Gaps = 2/184 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtagggctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctat 62
           |||| |||||||| |||||||||  ||||| |||||||||||||||||||||||||||||
Sbjct: 1   gtagagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctat 60

                                                                       
Query: 63  gaatcccataagccctaatccttatatat--aaaaaggatttggttatatggcttacata 120
           | ||||||||||||||||||||| || |   ||||||||||||||||||||| || ||||
Sbjct: 61  ggatcccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcata 120

                                                                       
Query: 121 tctcaggagctttaacttgccctttaattgcttttactcttctttggattgaagggagct 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 tctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagggagct 180

               
Query: 181 ctac 184
           ||||
Sbjct: 181 ctac 184




>39805_aly-MIR159b:mirbase
          Length = 202

 Score = 85.7 bits (43), Expect = 1e-17
 Identities = 146/176 (82%), Gaps = 7/176 (3%)
 Strand = Plus / Plus

                                                                       
Query: 8   gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
           |||||||  |||||||  ||| |||||||||||||||| ||||||||||||||||| |||
Sbjct: 19  gctccttgaagttcaatggagggtttagcagggtaaagtaaagctgctaagctatggatc 78

                                                                       
Query: 68  ccataagccctaatccttatatataaaaaggatttggttatatggcttacatatctcagg 127
           |||||| || ||   |  ||  | || |||||||   || ||||| || |||||||||||
Sbjct: 79  ccataaacctta--tcaaattcaaaataaggatt---ttttatggattccatatctcagg 133

                                                                   
Query: 128 agctttaactt-gccctttaattgcttttactcttctttggattgaagggagctct 182
           |||||| ||||  ||||||||| || || |||||||||||||||||||||||||||
Sbjct: 134 agctttcacttacccctttaatggc-ttcactcttctttggattgaagggagctct 188




>40017_ath-MIR159b:mirbase
          Length = 196

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                      
Query: 8  gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
          |||||||  |||||||  ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 7  gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66

                   
Query: 68 ccataagcc 76
          |||||||||
Sbjct: 67 ccataagcc 75



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 61/67 (91%), Gaps = 2/67 (2%)
 Strand = Plus / Plus

                                                                       
Query: 117 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 175
           ||||||||||||||||| |||| ||| |||||| ||||  ||||||||||||||||||||
Sbjct: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180

                  
Query: 176 gagctct 182
           |||||||
Sbjct: 181 gagctct 187




>40432_gma-MIR159a:mirbase
          Length = 214

 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 159 cttctttggattgaagggagctctaca 185
           |||||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctctaca 197




>41024_pvu-MIR159a:mirbase
          Length = 174

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 cttctttggattgaagggagctctac 184
           ||||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctctac 174




>41023_pvu-MIR159a:mirbase
          Length = 174

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 cttctttggattgaagggagctctac 184
           ||||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctctac 174




>40657_mtr-MIR159a:mirbase
          Length = 183

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 160 ttctttggattgaagggagctctaca 185
           ||||||||||||||||||||||||||
Sbjct: 149 ttctttggattgaagggagctctaca 174




>41572_vvi-MIR159c:mirbase
          Length = 190

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 163 tttggattgaagggagctctaca 185
           |||||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctctaca 182




>40397_ahy-MIR159:mirbase
          Length = 197

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 163 tttggattgaagggagctctaca 185
           |||||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctctaca 179




>40338_rco-MIR159:mirbase
          Length = 180

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 163 tttggattgaagggagctctaca 185
           |||||||||||||||||||||||
Sbjct: 155 tttggattgaagggagctctaca 177




>42695_zma-MIR159f:mirbase
          Length = 215

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 192 tctttggattgaagggagctct 213




>42690_zma-MIR159a:mirbase
          Length = 246

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226




>42635_tae-MIR159b:mirbase
          Length = 255

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249




>42494_sbi-MIR159:mirbase
          Length = 226

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 202 tctttggattgaagggagctct 223




>42468_ssp-MIR159a:mirbase
          Length = 261

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 221 tctttggattgaagggagctct 242




>42455_sof-MIR159d:mirbase
          Length = 265

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245




>42453_sof-MIR159b:mirbase
          Length = 266

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246




>42452_sof-MIR159a:mirbase
          Length = 265

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245




>41922_osa-MIR159f:mirbase
          Length = 188

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 164 ttggattgaagggagctctaca 185
           ||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180




>41918_osa-MIR159b:mirbase
          Length = 188

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177




>41917_osa-MIR159a:mirbase
          Length = 272

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261




>41916_osa-MIR159a:mirbase
          Length = 272

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261




>41868_far-MIR159:mirbase
          Length = 200

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 161 tctttggattgaagggagctct 182
           ||||||||||||||||||||||
Sbjct: 167 tctttggattgaagggagctct 188




>41218_csi-MIR159:mirbase
          Length = 216

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 163 tttggattgaagggagctctac 184
           ||||||||||||||||||||||
Sbjct: 186 tttggattgaagggagctctac 207




>41528_sly-MIR159:mirbase
          Length = 177

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tttggattgaagggagctcta 183
           |||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctcta 177




>41301_ptc-MIR159c:mirbase
          Length = 183

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tttggattgaagggagctcta 183
           |||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 111 ggcttacatatctcaggagcttta 134
           ||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132




>41300_ptc-MIR159b:mirbase
          Length = 187

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tttggattgaagggagctcta 183
           |||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctcta 178



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 111 ggcttacatatctcaggagcttta 134
           ||||| ||||||||||||||||||
Sbjct: 113 ggcttgcatatctcaggagcttta 136




>41299_ptc-MIR159a:mirbase
          Length = 183

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 tttggattgaagggagctcta 183
           |||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 111 ggcttacatatctcaggagcttta 134
           ||||| ||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132